Strain Fitness in Shewanella oneidensis MR-1 around SO0675

Experiment: sodium fluoride 100 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSO0674 and SO0675 overlap by 1 nucleotidesSO0675 and SO0676 are separated by 70 nucleotidesSO0676 and SO0677 are separated by 2 nucleotidesSO0677 and SO0678 overlap by 1 nucleotides SO0674: SO0674 - prophage MuSo1, protein Gp32, putative (NCBI ptt file), at 692,234 to 693,403 SO0674 SO0675: SO0675 - prophage MuSo1, major head subunit, putative (NCBI ptt file), at 693,403 to 694,323 SO0675 SO0676: SO0676 - conserved hypothetical protein (NCBI ptt file), at 694,394 to 694,840 SO0676 SO0677: SO0677 - conserved hypothetical protein (NCBI ptt file), at 694,843 to 695,283 SO0677 SO0678: SO0678 - hypothetical protein (NCBI ptt file), at 695,283 to 695,726 SO0678 Position (kb) 693 694 695Strain fitness (log2 ratio) -2 -1 0 1at 692.479 kb on + strand, within SO0674at 692.527 kb on + strand, within SO0674at 692.535 kb on - strand, within SO0674at 692.548 kb on + strand, within SO0674at 692.574 kb on + strand, within SO0674at 692.587 kb on - strand, within SO0674at 692.621 kb on + strand, within SO0674at 692.624 kb on + strand, within SO0674at 692.629 kb on + strand, within SO0674at 692.637 kb on - strand, within SO0674at 692.637 kb on - strand, within SO0674at 692.637 kb on - strand, within SO0674at 692.637 kb on - strand, within SO0674at 692.689 kb on - strand, within SO0674at 692.735 kb on - strand, within SO0674at 692.740 kb on - strand, within SO0674at 692.746 kb on - strand, within SO0674at 692.804 kb on - strand, within SO0674at 692.811 kb on - strand, within SO0674at 692.827 kb on - strand, within SO0674at 692.917 kb on + strand, within SO0674at 692.917 kb on + strand, within SO0674at 692.925 kb on - strand, within SO0674at 692.925 kb on - strand, within SO0674at 693.018 kb on + strand, within SO0674at 693.108 kb on + strand, within SO0674at 693.116 kb on - strand, within SO0674at 693.142 kb on + strand, within SO0674at 693.149 kb on + strand, within SO0674at 693.259 kb on + strand, within SO0674at 693.259 kb on + strand, within SO0674at 693.259 kb on + strand, within SO0674at 693.277 kb on - strand, within SO0674at 693.277 kb on - strand, within SO0674at 693.426 kb on + strandat 693.432 kb on - strandat 693.434 kb on - strandat 693.451 kb on - strandat 693.474 kb on + strandat 693.482 kb on - strandat 693.482 kb on - strandat 693.531 kb on + strand, within SO0675at 693.539 kb on - strand, within SO0675at 693.539 kb on - strand, within SO0675at 693.546 kb on - strand, within SO0675at 693.568 kb on + strand, within SO0675at 693.602 kb on + strand, within SO0675at 693.610 kb on + strand, within SO0675at 693.610 kb on - strand, within SO0675at 693.696 kb on + strand, within SO0675at 693.696 kb on + strand, within SO0675at 693.704 kb on - strand, within SO0675at 693.709 kb on + strand, within SO0675at 693.730 kb on + strand, within SO0675at 693.738 kb on - strand, within SO0675at 693.739 kb on - strand, within SO0675at 693.789 kb on + strand, within SO0675at 693.789 kb on + strand, within SO0675at 693.797 kb on - strand, within SO0675at 693.868 kb on - strand, within SO0675at 693.889 kb on - strand, within SO0675at 693.892 kb on + strand, within SO0675at 693.901 kb on + strand, within SO0675at 693.926 kb on - strand, within SO0675at 693.995 kb on - strand, within SO0675at 694.045 kb on - strand, within SO0675at 694.050 kb on - strand, within SO0675at 694.060 kb on + strand, within SO0675at 694.089 kb on - strand, within SO0675at 694.145 kb on - strand, within SO0675at 694.194 kb on - strand, within SO0675at 694.216 kb on - strand, within SO0675at 694.238 kb on + strandat 694.246 kb on - strandat 694.270 kb on + strandat 694.270 kb on - strandat 694.287 kb on + strandat 694.317 kb on - strandat 694.347 kb on - strandat 694.456 kb on + strand, within SO0676at 694.463 kb on + strand, within SO0676at 694.464 kb on - strand, within SO0676at 694.486 kb on - strand, within SO0676at 694.492 kb on - strand, within SO0676at 694.546 kb on + strand, within SO0676at 694.546 kb on + strand, within SO0676at 694.563 kb on + strand, within SO0676at 694.563 kb on + strand, within SO0676at 694.648 kb on + strand, within SO0676at 694.738 kb on + strand, within SO0676at 694.754 kb on + strand, within SO0676at 694.785 kb on - strand, within SO0676at 694.862 kb on - strandat 694.872 kb on - strandat 694.899 kb on + strand, within SO0677at 694.899 kb on + strand, within SO0677at 694.907 kb on - strand, within SO0677at 694.907 kb on - strand, within SO0677at 694.909 kb on - strand, within SO0677at 694.921 kb on + strand, within SO0677at 695.102 kb on + strand, within SO0677at 695.102 kb on + strand, within SO0677at 695.110 kb on - strand, within SO0677at 695.110 kb on - strand, within SO0677at 695.110 kb on - strand, within SO0677at 695.157 kb on + strand, within SO0677at 695.157 kb on + strand, within SO0677at 695.182 kb on - strand, within SO0677at 695.182 kb on - strand, within SO0677at 695.266 kb on + strandat 695.280 kb on - strandat 695.322 kb on + strandat 695.322 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 100 mM
remove
692,479 + SO0674 0.21 +0.5
692,527 + SO0674 0.25 -0.3
692,535 - SO0674 0.26 -0.1
692,548 + SO0674 0.27 -0.8
692,574 + SO0674 0.29 +0.4
692,587 - SO0674 0.30 -0.0
692,621 + SO0674 0.33 +0.5
692,624 + SO0674 0.33 -0.7
692,629 + SO0674 0.34 -0.1
692,637 - SO0674 0.34 -0.1
692,637 - SO0674 0.34 -0.1
692,637 - SO0674 0.34 +0.0
692,637 - SO0674 0.34 +0.1
692,689 - SO0674 0.39 -0.0
692,735 - SO0674 0.43 +0.4
692,740 - SO0674 0.43 +0.1
692,746 - SO0674 0.44 -0.2
692,804 - SO0674 0.49 -0.4
692,811 - SO0674 0.49 +0.3
692,827 - SO0674 0.51 -1.2
692,917 + SO0674 0.58 -0.3
692,917 + SO0674 0.58 -0.2
692,925 - SO0674 0.59 +0.6
692,925 - SO0674 0.59 +0.2
693,018 + SO0674 0.67 -0.4
693,108 + SO0674 0.75 +0.4
693,116 - SO0674 0.75 +0.0
693,142 + SO0674 0.78 -0.9
693,149 + SO0674 0.78 -0.3
693,259 + SO0674 0.88 -0.2
693,259 + SO0674 0.88 -0.9
693,259 + SO0674 0.88 -0.0
693,277 - SO0674 0.89 -0.6
693,277 - SO0674 0.89 -0.5
693,426 + -0.5
693,432 - -0.0
693,434 - -0.3
693,451 - +0.3
693,474 + -0.5
693,482 - -0.3
693,482 - +0.1
693,531 + SO0675 0.14 +0.1
693,539 - SO0675 0.15 -0.8
693,539 - SO0675 0.15 +0.1
693,546 - SO0675 0.16 +0.2
693,568 + SO0675 0.18 +0.1
693,602 + SO0675 0.22 +0.5
693,610 + SO0675 0.22 +0.3
693,610 - SO0675 0.22 -0.4
693,696 + SO0675 0.32 -0.2
693,696 + SO0675 0.32 -0.8
693,704 - SO0675 0.33 +0.2
693,709 + SO0675 0.33 -0.2
693,730 + SO0675 0.36 -0.1
693,738 - SO0675 0.36 -0.2
693,739 - SO0675 0.36 -0.1
693,789 + SO0675 0.42 +0.3
693,789 + SO0675 0.42 +0.0
693,797 - SO0675 0.43 +1.0
693,868 - SO0675 0.50 -0.4
693,889 - SO0675 0.53 +0.4
693,892 + SO0675 0.53 -0.1
693,901 + SO0675 0.54 -0.6
693,926 - SO0675 0.57 +1.1
693,995 - SO0675 0.64 -0.1
694,045 - SO0675 0.70 -0.3
694,050 - SO0675 0.70 +0.6
694,060 + SO0675 0.71 -0.4
694,089 - SO0675 0.74 +0.3
694,145 - SO0675 0.81 -0.2
694,194 - SO0675 0.86 -0.7
694,216 - SO0675 0.88 +0.1
694,238 + -0.3
694,246 - -0.1
694,270 + -0.5
694,270 - -0.5
694,287 + -0.3
694,317 - -0.8
694,347 - -0.1
694,456 + SO0676 0.14 -0.8
694,463 + SO0676 0.15 +0.2
694,464 - SO0676 0.16 +0.3
694,486 - SO0676 0.21 +0.6
694,492 - SO0676 0.22 +0.4
694,546 + SO0676 0.34 -1.1
694,546 + SO0676 0.34 +0.2
694,563 + SO0676 0.38 -0.6
694,563 + SO0676 0.38 -0.1
694,648 + SO0676 0.57 +1.1
694,738 + SO0676 0.77 +0.5
694,754 + SO0676 0.81 -1.0
694,785 - SO0676 0.87 -0.0
694,862 - -0.2
694,872 - +0.0
694,899 + SO0677 0.13 -0.8
694,899 + SO0677 0.13 +0.3
694,907 - SO0677 0.15 -0.2
694,907 - SO0677 0.15 +0.1
694,909 - SO0677 0.15 +0.8
694,921 + SO0677 0.18 -0.2
695,102 + SO0677 0.59 +0.3
695,102 + SO0677 0.59 +0.1
695,110 - SO0677 0.61 +0.1
695,110 - SO0677 0.61 +0.2
695,110 - SO0677 0.61 +0.3
695,157 + SO0677 0.71 -0.3
695,157 + SO0677 0.71 +0.5
695,182 - SO0677 0.77 +0.6
695,182 - SO0677 0.77 -0.2
695,266 + -0.1
695,280 - -2.0
695,322 + -0.6
695,322 + -0.2

Or see this region's nucleotide sequence