Strain Fitness in Marinobacter adhaerens HP15 around HP15_710

Experiment: D-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_708 and HP15_709 overlap by 4 nucleotidesHP15_709 and HP15_710 overlap by 4 nucleotidesHP15_710 and HP15_711 are separated by 202 nucleotides HP15_708: HP15_708 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, at 716,306 to 717,169 _708 HP15_709: HP15_709 - outer-membrane lipoprotein lolB precursor, at 717,166 to 717,798 _709 HP15_710: HP15_710 - tetratricopeptide TPR_2 repeat protein, at 717,795 to 719,573 _710 HP15_711: HP15_711 - glutamyl-tRNA reductase, at 719,776 to 721,080 _711 Position (kb) 717 718 719 720Strain fitness (log2 ratio) -2 -1 0 1at 717.871 kb on - strandat 717.987 kb on - strand, within HP15_710at 718.087 kb on - strand, within HP15_710at 718.127 kb on - strand, within HP15_710at 718.200 kb on - strand, within HP15_710at 718.301 kb on - strand, within HP15_710at 718.301 kb on - strand, within HP15_710at 718.416 kb on - strand, within HP15_710at 718.457 kb on - strand, within HP15_710at 718.457 kb on - strand, within HP15_710at 718.476 kb on - strand, within HP15_710at 718.486 kb on - strand, within HP15_710at 718.516 kb on - strand, within HP15_710at 718.563 kb on + strand, within HP15_710at 718.721 kb on - strand, within HP15_710at 718.903 kb on - strand, within HP15_710at 718.913 kb on - strand, within HP15_710at 718.964 kb on - strand, within HP15_710at 719.681 kb on + strandat 719.704 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate
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717,871 - -1.3
717,987 - HP15_710 0.11 +0.1
718,087 - HP15_710 0.16 -0.5
718,127 - HP15_710 0.19 +0.6
718,200 - HP15_710 0.23 +1.6
718,301 - HP15_710 0.28 -0.6
718,301 - HP15_710 0.28 +0.2
718,416 - HP15_710 0.35 +0.2
718,457 - HP15_710 0.37 -0.4
718,457 - HP15_710 0.37 -0.0
718,476 - HP15_710 0.38 +1.1
718,486 - HP15_710 0.39 -1.2
718,516 - HP15_710 0.41 +0.2
718,563 + HP15_710 0.43 -0.7
718,721 - HP15_710 0.52 -2.5
718,903 - HP15_710 0.62 -1.0
718,913 - HP15_710 0.63 -0.8
718,964 - HP15_710 0.66 +0.1
719,681 + +0.8
719,704 - +0.7

Or see this region's nucleotide sequence