Experiment: D-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_tRNA48 and HP15_3017 are separated by 809 nucleotides HP15_3017 and HP15_3018 are separated by 102 nucleotides HP15_3018 and HP15_3019 are separated by 249 nucleotides
HP15_tRNA48: HP15_tRNA48 - tRNA-Phe, at 3,161,615 to 3,161,690
_tRNA48
HP15_3017: HP15_3017 - molybdenum-pterin-binding protein, at 3,162,500 to 3,162,928
_3017
HP15_3018: HP15_3018 - protein containing UspA domain, at 3,163,031 to 3,163,402
_3018
HP15_3019: HP15_3019 - Na+/Ca+ antiporter, CaCA family, at 3,163,652 to 3,164,623
_3019
Position (kb)
3162
3163 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3161.511 kb on - strand at 3161.753 kb on - strand at 3161.797 kb on - strand at 3161.899 kb on + strand at 3161.982 kb on + strand at 3162.086 kb on - strand at 3162.236 kb on - strand at 3162.236 kb on - strand at 3162.247 kb on + strand at 3162.416 kb on - strand at 3162.565 kb on + strand, within HP15_3017 at 3162.586 kb on + strand, within HP15_3017 at 3162.594 kb on - strand, within HP15_3017 at 3162.635 kb on - strand, within HP15_3017 at 3162.673 kb on + strand, within HP15_3017 at 3162.673 kb on + strand, within HP15_3017 at 3162.673 kb on + strand, within HP15_3017 at 3162.673 kb on + strand, within HP15_3017 at 3162.681 kb on - strand, within HP15_3017 at 3162.759 kb on - strand, within HP15_3017 at 3162.903 kb on + strand at 3163.055 kb on - strand at 3163.423 kb on + strand at 3163.506 kb on + strand at 3163.587 kb on - strand at 3163.713 kb on - strand at 3163.805 kb on - strand, within HP15_3019 at 3163.835 kb on - strand, within HP15_3019 at 3163.865 kb on + strand, within HP15_3019 at 3163.878 kb on - strand, within HP15_3019
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate remove 3,161,511 - +0.5 3,161,753 - -0.3 3,161,797 - +0.9 3,161,899 + -0.8 3,161,982 + +0.4 3,162,086 - -1.1 3,162,236 - -0.3 3,162,236 - -0.2 3,162,247 + +2.1 3,162,416 - +1.8 3,162,565 + HP15_3017 0.15 +0.2 3,162,586 + HP15_3017 0.20 -0.6 3,162,594 - HP15_3017 0.22 +0.4 3,162,635 - HP15_3017 0.31 -0.3 3,162,673 + HP15_3017 0.40 +0.1 3,162,673 + HP15_3017 0.40 -0.1 3,162,673 + HP15_3017 0.40 +0.2 3,162,673 + HP15_3017 0.40 -1.8 3,162,681 - HP15_3017 0.42 -1.6 3,162,759 - HP15_3017 0.60 -1.6 3,162,903 + -0.1 3,163,055 - +0.1 3,163,423 + -0.7 3,163,506 + -0.1 3,163,587 - -0.3 3,163,713 - -0.5 3,163,805 - HP15_3019 0.16 +0.5 3,163,835 - HP15_3019 0.19 +0.2 3,163,865 + HP15_3019 0.22 +0.1 3,163,878 - HP15_3019 0.23 +0.2
Or see this region's nucleotide sequence