Strain Fitness in Marinobacter adhaerens HP15 around HP15_1222

Experiment: D-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1221 and HP15_1222 are separated by 19 nucleotidesHP15_1222 and HP15_1223 are separated by 24 nucleotidesHP15_1223 and HP15_1224 are separated by 12 nucleotides HP15_1221: HP15_1221 - recombination-associated protein rdgC, at 1,271,546 to 1,272,472 _1221 HP15_1222: HP15_1222 - conserved hypothetical protein, membrane, at 1,272,492 to 1,272,692 _1222 HP15_1223: HP15_1223 - protein YaaA, at 1,272,717 to 1,273,487 _1223 HP15_1224: HP15_1224 - glutaredoxin 2, at 1,273,500 to 1,273,733 _1224 Position (kb) 1272 1273Strain fitness (log2 ratio) -1 0 1at 1271.535 kb on + strandat 1271.551 kb on - strandat 1271.586 kb on + strandat 1271.597 kb on - strandat 1271.617 kb on + strandat 1271.681 kb on + strand, within HP15_1221at 1271.751 kb on - strand, within HP15_1221at 1271.959 kb on - strand, within HP15_1221at 1272.006 kb on + strand, within HP15_1221at 1272.026 kb on - strand, within HP15_1221at 1272.064 kb on + strand, within HP15_1221at 1272.072 kb on - strand, within HP15_1221at 1272.191 kb on - strand, within HP15_1221at 1272.215 kb on - strand, within HP15_1221at 1272.376 kb on + strand, within HP15_1221at 1272.556 kb on + strand, within HP15_1222at 1272.557 kb on + strand, within HP15_1222at 1272.774 kb on + strandat 1272.796 kb on + strand, within HP15_1223at 1272.815 kb on + strand, within HP15_1223at 1272.823 kb on - strand, within HP15_1223at 1272.883 kb on + strand, within HP15_1223at 1272.985 kb on - strand, within HP15_1223at 1273.542 kb on + strand, within HP15_1224at 1273.550 kb on - strand, within HP15_1224at 1273.678 kb on + strand, within HP15_1224

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate
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1,271,535 + +0.0
1,271,551 - -0.1
1,271,586 + +1.3
1,271,597 - +0.3
1,271,617 + -0.6
1,271,681 + HP15_1221 0.15 +0.4
1,271,751 - HP15_1221 0.22 +0.8
1,271,959 - HP15_1221 0.45 -0.2
1,272,006 + HP15_1221 0.50 +0.0
1,272,026 - HP15_1221 0.52 +0.7
1,272,064 + HP15_1221 0.56 +0.9
1,272,072 - HP15_1221 0.57 +0.7
1,272,191 - HP15_1221 0.70 +0.6
1,272,215 - HP15_1221 0.72 +0.4
1,272,376 + HP15_1221 0.90 +0.8
1,272,556 + HP15_1222 0.32 +0.4
1,272,557 + HP15_1222 0.32 -0.9
1,272,774 + +1.3
1,272,796 + HP15_1223 0.10 +0.1
1,272,815 + HP15_1223 0.13 -0.0
1,272,823 - HP15_1223 0.14 +0.9
1,272,883 + HP15_1223 0.22 -0.7
1,272,985 - HP15_1223 0.35 +0.1
1,273,542 + HP15_1224 0.18 -0.5
1,273,550 - HP15_1224 0.21 -0.4
1,273,678 + HP15_1224 0.76 +1.3

Or see this region's nucleotide sequence