Experiment: rich media with hydrogen peroxide 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3417 and Dsui_3418 overlap by 8 nucleotides Dsui_3418 and Dsui_3419 are separated by 109 nucleotides Dsui_3419 and Dsui_3421 are separated by 385 nucleotides
Dsui_3417: Dsui_3417 - hypothetical protein, at 3,669,933 to 3,670,328
_3417
Dsui_3418: Dsui_3418 - putative permease, at 3,670,321 to 3,671,055
_3418
Dsui_3419: Dsui_3419 - transcriptional regulator, at 3,671,165 to 3,672,064
_3419
Dsui_3421: Dsui_3421 - putative glycerate kinase, at 3,672,450 to 3,673,769
_3421
Position (kb)
3671
3672
3673 Strain fitness (log2 ratio)
-1
0
1
2 at 3670.254 kb on + strand at 3670.272 kb on - strand at 3670.311 kb on - strand at 3670.418 kb on - strand at 3670.494 kb on + strand at 3670.685 kb on - strand, within Dsui_3418 at 3670.770 kb on + strand at 3670.824 kb on + strand at 3670.845 kb on + strand, within Dsui_3418 at 3670.853 kb on - strand at 3670.880 kb on - strand at 3670.913 kb on + strand at 3670.939 kb on - strand at 3670.972 kb on + strand, within Dsui_3418 at 3671.163 kb on - strand at 3671.240 kb on - strand at 3671.377 kb on + strand at 3671.388 kb on + strand, within Dsui_3419 at 3671.476 kb on - strand, within Dsui_3419 at 3671.480 kb on - strand at 3671.736 kb on + strand, within Dsui_3419 at 3671.756 kb on - strand at 3671.756 kb on - strand, within Dsui_3419 at 3671.756 kb on - strand, within Dsui_3419 at 3671.922 kb on + strand at 3671.942 kb on + strand, within Dsui_3419 at 3672.010 kb on - strand at 3672.099 kb on + strand at 3672.108 kb on - strand at 3672.120 kb on + strand at 3672.129 kb on + strand at 3672.188 kb on + strand at 3672.191 kb on - strand at 3672.191 kb on - strand at 3672.250 kb on - strand at 3672.393 kb on - strand at 3672.504 kb on + strand at 3672.719 kb on + strand at 3672.759 kb on + strand at 3672.858 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM remove 3,670,254 + +0.7 3,670,272 - +1.1 3,670,311 - +0.1 3,670,418 - +0.7 3,670,494 + +0.1 3,670,685 - Dsui_3418 0.50 -0.3 3,670,770 + +0.7 3,670,824 + +0.1 3,670,845 + Dsui_3418 0.71 -0.2 3,670,853 - +0.7 3,670,880 - -0.3 3,670,913 + -0.3 3,670,939 - +0.1 3,670,972 + Dsui_3418 0.89 +0.8 3,671,163 - +0.7 3,671,240 - +0.1 3,671,377 + -0.3 3,671,388 + Dsui_3419 0.25 +1.1 3,671,476 - Dsui_3419 0.35 +0.2 3,671,480 - +1.7 3,671,736 + Dsui_3419 0.63 +0.5 3,671,756 - -1.3 3,671,756 - Dsui_3419 0.66 +0.2 3,671,756 - Dsui_3419 0.66 +0.4 3,671,922 + +0.3 3,671,942 + Dsui_3419 0.86 +1.2 3,672,010 - -0.9 3,672,099 + -0.3 3,672,108 - +1.7 3,672,120 + +1.7 3,672,129 + +1.7 3,672,188 + +2.7 3,672,191 - +0.7 3,672,191 - -0.3 3,672,250 - +0.7 3,672,393 - -0.0 3,672,504 + +1.7 3,672,719 + +0.3 3,672,759 + -0.3 3,672,858 + +0.3
Or see this region's nucleotide sequence