Experiment: rich media with hydrogen peroxide 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3373 and Dsui_3374 are separated by 20 nucleotides Dsui_3374 and Dsui_3375 are separated by 143 nucleotides Dsui_3375 and Dsui_3376 are separated by 180 nucleotides
Dsui_3373: Dsui_3373 - Na+/phosphate symporter, at 3,615,423 to 3,617,114
_3373
Dsui_3374: Dsui_3374 - cyclic nucleotide-binding protein, at 3,617,135 to 3,617,500
_3374
Dsui_3375: Dsui_3375 - hypothetical protein, at 3,617,644 to 3,617,820
_3375
Dsui_3376: Dsui_3376 - aspartate/tyrosine/aromatic aminotransferase, at 3,618,001 to 3,619,167
_3376
Position (kb)
3617
3618 Strain fitness (log2 ratio)
-1
0
1
2 at 3616.241 kb on + strand, within Dsui_3373 at 3616.260 kb on + strand, within Dsui_3373 at 3616.327 kb on + strand, within Dsui_3373 at 3616.481 kb on + strand, within Dsui_3373 at 3616.568 kb on - strand, within Dsui_3373 at 3616.576 kb on + strand, within Dsui_3373 at 3616.584 kb on - strand, within Dsui_3373 at 3616.584 kb on - strand at 3616.603 kb on - strand at 3616.704 kb on + strand, within Dsui_3373 at 3616.716 kb on + strand, within Dsui_3373 at 3616.716 kb on + strand, within Dsui_3373 at 3616.745 kb on + strand, within Dsui_3373 at 3616.835 kb on - strand, within Dsui_3373 at 3616.949 kb on + strand at 3617.150 kb on - strand at 3617.208 kb on + strand, within Dsui_3374 at 3617.208 kb on + strand, within Dsui_3374 at 3617.247 kb on - strand at 3617.335 kb on + strand, within Dsui_3374 at 3617.354 kb on + strand, within Dsui_3374 at 3617.367 kb on + strand, within Dsui_3374 at 3617.428 kb on - strand at 3617.531 kb on + strand at 3617.769 kb on - strand, within Dsui_3375 at 3618.125 kb on - strand, within Dsui_3376 at 3618.187 kb on - strand, within Dsui_3376 at 3618.207 kb on + strand at 3618.345 kb on - strand, within Dsui_3376 at 3618.358 kb on + strand at 3618.382 kb on + strand at 3618.384 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM remove 3,616,241 + Dsui_3373 0.48 -0.8 3,616,260 + Dsui_3373 0.49 +0.7 3,616,327 + Dsui_3373 0.53 +1.9 3,616,481 + Dsui_3373 0.63 -0.7 3,616,568 - Dsui_3373 0.68 +0.4 3,616,576 + Dsui_3373 0.68 -0.6 3,616,584 - Dsui_3373 0.69 -1.5 3,616,584 - +1.1 3,616,603 - +2.2 3,616,704 + Dsui_3373 0.76 +0.4 3,616,716 + Dsui_3373 0.76 +0.7 3,616,716 + Dsui_3373 0.76 +0.3 3,616,745 + Dsui_3373 0.78 -0.7 3,616,835 - Dsui_3373 0.83 -0.2 3,616,949 + +0.1 3,617,150 - -0.3 3,617,208 + Dsui_3374 0.20 +0.9 3,617,208 + Dsui_3374 0.20 +0.4 3,617,247 - +0.7 3,617,335 + Dsui_3374 0.55 -0.9 3,617,354 + Dsui_3374 0.60 +0.6 3,617,367 + Dsui_3374 0.63 +0.1 3,617,428 - +1.1 3,617,531 + +0.1 3,617,769 - Dsui_3375 0.71 +0.2 3,618,125 - Dsui_3376 0.11 +0.4 3,618,187 - Dsui_3376 0.16 -0.1 3,618,207 + +0.7 3,618,345 - Dsui_3376 0.29 -0.4 3,618,358 + +0.7 3,618,382 + -0.2 3,618,384 + +0.7
Or see this region's nucleotide sequence