Experiment: rich media with hydrogen peroxide 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3322 and Dsui_3323 are separated by 137 nucleotides Dsui_3323 and Dsui_3324 are separated by 92 nucleotides Dsui_3324 and Dsui_3325 are separated by 61 nucleotides
Dsui_3322: Dsui_3322 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase, at 3,561,786 to 3,562,823
_3322
Dsui_3323: Dsui_3323 - tRNA-guanine transglycosylase, queuosine-34-forming, at 3,562,961 to 3,564,085
_3323
Dsui_3324: Dsui_3324 - preprotein translocase, YajC subunit, at 3,564,178 to 3,564,507
_3324
Dsui_3325: Dsui_3325 - protein-export membrane protein, SecD/SecF family, at 3,564,569 to 3,566,437
_3325
Position (kb)
3562
3563
3564
3565 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3562.016 kb on + strand, within Dsui_3322 at 3562.120 kb on + strand, within Dsui_3322 at 3562.260 kb on + strand, within Dsui_3322 at 3562.281 kb on + strand, within Dsui_3322 at 3562.419 kb on - strand at 3562.546 kb on - strand at 3562.558 kb on + strand, within Dsui_3322 at 3562.558 kb on + strand, within Dsui_3322 at 3562.684 kb on + strand at 3562.684 kb on + strand at 3562.684 kb on + strand, within Dsui_3322 at 3562.692 kb on - strand at 3562.695 kb on - strand at 3562.740 kb on + strand at 3562.740 kb on + strand at 3562.784 kb on + strand at 3562.824 kb on - strand at 3562.847 kb on + strand at 3562.847 kb on + strand at 3562.855 kb on - strand at 3562.877 kb on + strand at 3562.885 kb on - strand at 3562.888 kb on + strand at 3562.956 kb on + strand at 3562.956 kb on + strand at 3562.956 kb on + strand at 3562.956 kb on + strand at 3562.975 kb on + strand at 3563.030 kb on + strand at 3563.061 kb on + strand at 3563.061 kb on + strand at 3563.069 kb on - strand at 3563.111 kb on + strand, within Dsui_3323 at 3563.206 kb on + strand, within Dsui_3323 at 3563.263 kb on + strand, within Dsui_3323 at 3563.282 kb on + strand, within Dsui_3323 at 3563.633 kb on + strand, within Dsui_3323 at 3563.788 kb on + strand at 3563.789 kb on + strand, within Dsui_3323 at 3563.904 kb on - strand, within Dsui_3323 at 3563.905 kb on + strand, within Dsui_3323 at 3563.970 kb on + strand, within Dsui_3323 at 3563.970 kb on + strand, within Dsui_3323 at 3564.080 kb on + strand at 3564.080 kb on + strand at 3564.274 kb on + strand, within Dsui_3324 at 3564.475 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM remove 3,562,016 + Dsui_3322 0.22 -0.1 3,562,120 + Dsui_3322 0.32 -1.5 3,562,260 + Dsui_3322 0.46 +0.5 3,562,281 + Dsui_3322 0.48 -0.3 3,562,419 - -1.2 3,562,546 - +0.6 3,562,558 + Dsui_3322 0.74 +0.3 3,562,558 + Dsui_3322 0.74 +0.3 3,562,684 + -0.4 3,562,684 + +0.6 3,562,684 + Dsui_3322 0.87 -1.8 3,562,692 - +2.6 3,562,695 - -0.7 3,562,740 + -0.1 3,562,740 + +0.4 3,562,784 + -0.5 3,562,824 - -1.9 3,562,847 + +0.4 3,562,847 + -0.1 3,562,855 - +0.6 3,562,877 + +0.1 3,562,885 - +3.2 3,562,888 + +0.3 3,562,956 + +0.2 3,562,956 + -1.0 3,562,956 + +0.1 3,562,956 + -0.5 3,562,975 + +0.6 3,563,030 + -1.6 3,563,061 + -0.4 3,563,061 + -2.4 3,563,069 - +1.6 3,563,111 + Dsui_3323 0.13 -1.2 3,563,206 + Dsui_3323 0.22 -1.3 3,563,263 + Dsui_3323 0.27 -0.2 3,563,282 + Dsui_3323 0.29 +0.8 3,563,633 + Dsui_3323 0.60 -0.2 3,563,788 + +0.0 3,563,789 + Dsui_3323 0.74 +0.0 3,563,904 - Dsui_3323 0.84 +0.2 3,563,905 + Dsui_3323 0.84 -0.6 3,563,970 + Dsui_3323 0.90 -1.5 3,563,970 + Dsui_3323 0.90 -1.6 3,564,080 + -0.1 3,564,080 + -0.1 3,564,274 + Dsui_3324 0.29 +0.0 3,564,475 + -0.4
Or see this region's nucleotide sequence