Strain Fitness in Dechlorosoma suillum PS around Dsui_3269

Experiment: rich media with hydrogen peroxide 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_3268 and Dsui_3269 are separated by 103 nucleotidesDsui_3269 and Dsui_3270 are separated by 71 nucleotidesDsui_3270 and Dsui_3271 are separated by 70 nucleotides Dsui_3268: Dsui_3268 - exodeoxyribonuclease VII, large subunit, at 3,506,812 to 3,508,212 _3268 Dsui_3269: Dsui_3269 - superoxide dismutase, at 3,508,316 to 3,508,903 _3269 Dsui_3270: Dsui_3270 - 2'-5' RNA ligase, at 3,508,975 to 3,509,652 _3270 Dsui_3271: Dsui_3271 - ATP-dependent protease Clp, ATPase subunit, at 3,509,723 to 3,510,724 _3271 Position (kb) 3508 3509Strain fitness (log2 ratio) -2 -1 0 1at 3507.383 kb on + strand, within Dsui_3268at 3507.387 kb on + strand, within Dsui_3268at 3507.462 kb on - strandat 3507.521 kb on + strandat 3507.728 kb on - strandat 3507.826 kb on - strand, within Dsui_3268at 3507.826 kb on - strand, within Dsui_3268at 3507.854 kb on + strand, within Dsui_3268at 3507.963 kb on + strand, within Dsui_3268at 3508.263 kb on + strandat 3508.271 kb on - strandat 3508.271 kb on - strandat 3508.271 kb on - strandat 3508.271 kb on - strandat 3508.275 kb on + strandat 3508.994 kb on + strandat 3508.999 kb on + strandat 3509.001 kb on - strandat 3509.002 kb on - strandat 3509.106 kb on - strandat 3509.106 kb on - strandat 3509.276 kb on + strand, within Dsui_3270at 3509.282 kb on + strand, within Dsui_3270at 3509.290 kb on - strand, within Dsui_3270at 3509.345 kb on + strand, within Dsui_3270at 3509.497 kb on - strand, within Dsui_3270at 3509.590 kb on - strandat 3509.596 kb on - strandat 3509.654 kb on - strandat 3509.718 kb on + strandat 3509.718 kb on + strandat 3509.763 kb on + strandat 3509.771 kb on - strandat 3509.878 kb on - strand, within Dsui_3271

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM
remove
3,507,383 + Dsui_3268 0.41 -0.3
3,507,387 + Dsui_3268 0.41 -0.5
3,507,462 - +1.6
3,507,521 + +1.6
3,507,728 - +1.6
3,507,826 - Dsui_3268 0.72 +1.6
3,507,826 - Dsui_3268 0.72 -0.4
3,507,854 + Dsui_3268 0.74 -0.7
3,507,963 + Dsui_3268 0.82 -0.7
3,508,263 + +0.1
3,508,271 - -0.7
3,508,271 - +0.3
3,508,271 - +1.6
3,508,271 - +0.6
3,508,275 + -0.4
3,508,994 + +0.6
3,508,999 + -2.0
3,509,001 - -1.2
3,509,002 - +0.6
3,509,106 - +1.2
3,509,106 - +1.0
3,509,276 + Dsui_3270 0.44 +0.1
3,509,282 + Dsui_3270 0.45 -0.4
3,509,290 - Dsui_3270 0.46 +0.4
3,509,345 + Dsui_3270 0.55 -0.4
3,509,497 - Dsui_3270 0.77 +0.9
3,509,590 - -0.4
3,509,596 - +1.6
3,509,654 - +1.6
3,509,718 + +0.6
3,509,718 + +0.4
3,509,763 + +0.4
3,509,771 - +1.2
3,509,878 - Dsui_3271 0.15 +0.8

Or see this region's nucleotide sequence