Experiment: rich media with hydrogen peroxide 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3205 and Dsui_3206 are separated by 80 nucleotides Dsui_3206 and Dsui_3207 overlap by 7 nucleotides Dsui_3207 and Dsui_3208 are separated by 262 nucleotides
Dsui_3205: Dsui_3205 - pseudouridine synthase, RluA family, at 3,441,082 to 3,441,735
_3205
Dsui_3206: Dsui_3206 - putative metal-binding protein, at 3,441,816 to 3,442,232
_3206
Dsui_3207: Dsui_3207 - ankyrin repeat-containing protein, at 3,442,226 to 3,442,738
_3207
Dsui_3208: Dsui_3208 - cysteine synthase A, at 3,443,001 to 3,443,933
_3208
Position (kb)
3442
3443 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3441.339 kb on - strand, within Dsui_3205 at 3441.396 kb on - strand, within Dsui_3205 at 3441.396 kb on - strand, within Dsui_3205 at 3441.534 kb on + strand at 3441.534 kb on + strand, within Dsui_3205 at 3441.557 kb on - strand, within Dsui_3205 at 3441.574 kb on - strand, within Dsui_3205 at 3441.614 kb on + strand at 3441.694 kb on - strand at 3441.697 kb on + strand at 3441.697 kb on + strand at 3441.781 kb on - strand at 3441.942 kb on + strand, within Dsui_3206 at 3442.073 kb on + strand, within Dsui_3206 at 3442.081 kb on - strand, within Dsui_3206 at 3442.083 kb on - strand, within Dsui_3206 at 3442.089 kb on - strand, within Dsui_3206 at 3442.159 kb on + strand at 3442.167 kb on - strand, within Dsui_3206 at 3442.484 kb on - strand, within Dsui_3207 at 3442.513 kb on + strand at 3442.522 kb on - strand, within Dsui_3207 at 3442.613 kb on + strand at 3442.621 kb on - strand, within Dsui_3207 at 3442.695 kb on + strand at 3442.728 kb on + strand at 3442.736 kb on - strand at 3442.793 kb on + strand at 3442.828 kb on + strand at 3442.831 kb on - strand at 3442.836 kb on - strand at 3442.836 kb on - strand at 3442.836 kb on - strand at 3442.836 kb on - strand at 3442.844 kb on - strand at 3442.857 kb on + strand at 3442.918 kb on + strand at 3442.956 kb on + strand at 3443.015 kb on + strand at 3443.015 kb on + strand at 3443.016 kb on + strand at 3443.023 kb on - strand at 3443.024 kb on - strand at 3443.125 kb on + strand, within Dsui_3208 at 3443.237 kb on + strand, within Dsui_3208 at 3443.315 kb on + strand, within Dsui_3208 at 3443.315 kb on + strand, within Dsui_3208 at 3443.323 kb on - strand, within Dsui_3208 at 3443.394 kb on - strand at 3443.424 kb on + strand, within Dsui_3208 at 3443.468 kb on + strand, within Dsui_3208 at 3443.486 kb on - strand at 3443.537 kb on + strand, within Dsui_3208 at 3443.658 kb on + strand, within Dsui_3208 at 3443.678 kb on - strand, within Dsui_3208
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM remove 3,441,339 - Dsui_3205 0.39 -0.8 3,441,396 - Dsui_3205 0.48 +0.1 3,441,396 - Dsui_3205 0.48 -0.1 3,441,534 + +1.2 3,441,534 + Dsui_3205 0.69 -0.2 3,441,557 - Dsui_3205 0.73 +0.3 3,441,574 - Dsui_3205 0.75 +0.4 3,441,614 + -0.4 3,441,694 - +0.2 3,441,697 + +0.6 3,441,697 + -0.4 3,441,781 - +0.7 3,441,942 + Dsui_3206 0.30 +0.8 3,442,073 + Dsui_3206 0.62 -1.4 3,442,081 - Dsui_3206 0.64 +0.8 3,442,083 - Dsui_3206 0.64 +1.1 3,442,089 - Dsui_3206 0.65 -1.2 3,442,159 + +0.6 3,442,167 - Dsui_3206 0.84 +0.8 3,442,484 - Dsui_3207 0.50 -2.6 3,442,513 + -0.4 3,442,522 - Dsui_3207 0.58 -0.5 3,442,613 + -1.0 3,442,621 - Dsui_3207 0.77 +0.0 3,442,695 + +1.6 3,442,728 + +1.0 3,442,736 - +2.2 3,442,793 + +0.0 3,442,828 + -1.0 3,442,831 - -0.2 3,442,836 - -1.2 3,442,836 - -0.2 3,442,836 - +0.3 3,442,836 - -1.7 3,442,844 - +0.3 3,442,857 + +0.0 3,442,918 + -1.2 3,442,956 + +0.4 3,443,015 + -0.2 3,443,015 + -0.6 3,443,016 + -0.1 3,443,023 - +1.6 3,443,024 - +0.0 3,443,125 + Dsui_3208 0.13 +0.3 3,443,237 + Dsui_3208 0.25 -0.5 3,443,315 + Dsui_3208 0.34 -0.7 3,443,315 + Dsui_3208 0.34 -0.4 3,443,323 - Dsui_3208 0.35 +0.6 3,443,394 - +0.0 3,443,424 + Dsui_3208 0.45 -0.4 3,443,468 + Dsui_3208 0.50 +0.3 3,443,486 - +0.0 3,443,537 + Dsui_3208 0.57 -0.3 3,443,658 + Dsui_3208 0.70 -0.2 3,443,678 - Dsui_3208 0.73 -0.9
Or see this region's nucleotide sequence