Experiment: rich media with hydrogen peroxide 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3113 and Dsui_3114 are separated by 96 nucleotides Dsui_3114 and Dsui_3115 overlap by 14 nucleotides Dsui_3115 and Dsui_3116 overlap by 1 nucleotides Dsui_3116 and Dsui_3117 are separated by 9 nucleotides
Dsui_3113: Dsui_3113 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 3,334,788 to 3,337,169
_3113
Dsui_3114: Dsui_3114 - heme/copper-type cytochrome/quinol oxidase, subunit 3, at 3,337,266 to 3,337,868
_3114
Dsui_3115: Dsui_3115 - hypothetical protein, at 3,337,855 to 3,338,169
_3115
Dsui_3116: Dsui_3116 - ATPase family protein associated with various cellular activities (AAA), at 3,338,169 to 3,338,960
_3116
Dsui_3117: Dsui_3117 - hypothetical protein, at 3,338,970 to 3,339,374
_3117
Position (kb)
3337
3338
3339 Strain fitness (log2 ratio)
-1
0
1
2 at 3336.895 kb on + strand, within Dsui_3113 at 3336.903 kb on + strand, within Dsui_3113 at 3336.956 kb on + strand at 3336.956 kb on + strand at 3336.991 kb on + strand at 3337.050 kb on + strand at 3337.060 kb on + strand at 3337.164 kb on + strand at 3337.383 kb on + strand, within Dsui_3114 at 3337.413 kb on + strand, within Dsui_3114 at 3337.426 kb on - strand at 3337.445 kb on - strand at 3337.468 kb on - strand at 3337.518 kb on + strand, within Dsui_3114 at 3337.784 kb on - strand, within Dsui_3114 at 3337.825 kb on - strand at 3337.850 kb on + strand at 3337.860 kb on - strand at 3337.965 kb on + strand, within Dsui_3115 at 3338.083 kb on + strand, within Dsui_3115 at 3338.099 kb on + strand at 3338.469 kb on - strand at 3338.760 kb on + strand at 3338.975 kb on - strand at 3338.975 kb on - strand at 3339.046 kb on - strand, within Dsui_3117 at 3339.066 kb on + strand, within Dsui_3117 at 3339.066 kb on + strand, within Dsui_3117 at 3339.081 kb on + strand, within Dsui_3117
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM remove 3,336,895 + Dsui_3113 0.88 +0.8 3,336,903 + Dsui_3113 0.89 +0.2 3,336,956 + +0.4 3,336,956 + +1.3 3,336,991 + -0.5 3,337,050 + +0.1 3,337,060 + -0.2 3,337,164 + +0.2 3,337,383 + Dsui_3114 0.19 -0.5 3,337,413 + Dsui_3114 0.24 +0.2 3,337,426 - +2.3 3,337,445 - +0.0 3,337,468 - +0.6 3,337,518 + Dsui_3114 0.42 -0.1 3,337,784 - Dsui_3114 0.86 +0.6 3,337,825 - -1.0 3,337,850 + +0.1 3,337,860 - -0.7 3,337,965 + Dsui_3115 0.35 -0.6 3,338,083 + Dsui_3115 0.72 -0.3 3,338,099 + +0.9 3,338,469 - +2.3 3,338,760 + +0.3 3,338,975 - +0.0 3,338,975 - +1.0 3,339,046 - Dsui_3117 0.19 +0.1 3,339,066 + Dsui_3117 0.24 +1.3 3,339,066 + Dsui_3117 0.24 +0.4 3,339,081 + Dsui_3117 0.27 +0.2
Or see this region's nucleotide sequence