Experiment: rich media with hydrogen peroxide 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3066 and Dsui_3067 are separated by 3 nucleotides Dsui_3067 and Dsui_3068 are separated by 94 nucleotides Dsui_3068 and Dsui_3069 are separated by 52 nucleotides Dsui_3069 and Dsui_3070 are separated by 58 nucleotides
Dsui_3066: Dsui_3066 - dihydrodipicolinate reductase, at 3,282,819 to 3,283,625
_3066
Dsui_3067: Dsui_3067 - small protein A (tmRNA-binding), at 3,283,629 to 3,284,159
_3067
Dsui_3068: Dsui_3068 - Fe2+/Zn2+ uptake regulation protein, at 3,284,254 to 3,284,724
_3068
Dsui_3069: Dsui_3069 - putative membrane protein, at 3,284,777 to 3,285,343
_3069
Dsui_3070: Dsui_3070 - periplasmic component of amino acid ABC-type transporter/signal transduction system, at 3,285,402 to 3,286,253
_3070
Position (kb)
3284
3285 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3283.421 kb on + strand at 3283.429 kb on - strand, within Dsui_3066 at 3283.429 kb on - strand, within Dsui_3066 at 3283.459 kb on + strand at 3283.467 kb on - strand, within Dsui_3066 at 3283.467 kb on - strand, within Dsui_3066 at 3283.467 kb on - strand, within Dsui_3066 at 3283.467 kb on - strand, within Dsui_3066 at 3283.550 kb on + strand at 3283.550 kb on + strand at 3283.580 kb on - strand at 3283.647 kb on - strand at 3283.697 kb on - strand, within Dsui_3067 at 3283.725 kb on - strand, within Dsui_3067 at 3284.245 kb on + strand at 3284.707 kb on - strand at 3284.753 kb on + strand at 3284.793 kb on + strand at 3284.793 kb on + strand at 3284.796 kb on + strand at 3284.833 kb on + strand at 3284.834 kb on + strand, within Dsui_3069 at 3284.855 kb on - strand at 3284.869 kb on + strand, within Dsui_3069 at 3284.919 kb on + strand, within Dsui_3069 at 3284.927 kb on - strand at 3284.963 kb on - strand at 3285.202 kb on + strand, within Dsui_3069 at 3285.228 kb on - strand at 3285.263 kb on + strand, within Dsui_3069 at 3285.323 kb on - strand at 3285.390 kb on - strand at 3285.425 kb on + strand at 3285.454 kb on - strand at 3285.521 kb on - strand, within Dsui_3070 at 3285.528 kb on + strand, within Dsui_3070 at 3285.583 kb on - strand, within Dsui_3070 at 3285.601 kb on + strand, within Dsui_3070 at 3285.672 kb on + strand, within Dsui_3070 at 3285.711 kb on - strand, within Dsui_3070
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM remove 3,283,421 + +0.6 3,283,429 - Dsui_3066 0.76 -0.0 3,283,429 - Dsui_3066 0.76 -0.9 3,283,459 + -1.2 3,283,467 - Dsui_3066 0.80 -2.7 3,283,467 - Dsui_3066 0.80 -1.2 3,283,467 - Dsui_3066 0.80 -0.4 3,283,467 - Dsui_3066 0.80 -0.6 3,283,550 + -0.5 3,283,550 + -1.1 3,283,580 - -0.9 3,283,647 - +0.4 3,283,697 - Dsui_3067 0.13 +0.3 3,283,725 - Dsui_3067 0.18 -0.2 3,284,245 + -0.9 3,284,707 - -0.3 3,284,753 + +0.5 3,284,793 + +0.1 3,284,793 + +0.4 3,284,796 + +0.3 3,284,833 + +1.0 3,284,834 + Dsui_3069 0.10 -0.7 3,284,855 - +1.6 3,284,869 + Dsui_3069 0.16 +1.3 3,284,919 + Dsui_3069 0.25 -0.2 3,284,927 - +2.6 3,284,963 - +0.0 3,285,202 + Dsui_3069 0.75 +0.9 3,285,228 - +1.6 3,285,263 + Dsui_3069 0.86 +0.5 3,285,323 - +0.0 3,285,390 - -0.7 3,285,425 + +0.1 3,285,454 - +1.2 3,285,521 - Dsui_3070 0.14 +0.5 3,285,528 + Dsui_3070 0.15 -0.5 3,285,583 - Dsui_3070 0.21 -1.6 3,285,601 + Dsui_3070 0.23 +0.1 3,285,672 + Dsui_3070 0.32 +0.4 3,285,711 - Dsui_3070 0.36 +0.1
Or see this region's nucleotide sequence