Experiment: rich media with hydrogen peroxide 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3027 and Dsui_3028 are separated by 12 nucleotides Dsui_3028 and Dsui_3029 overlap by 4 nucleotides Dsui_3029 and Dsui_3030 overlap by 4 nucleotides
Dsui_3027: Dsui_3027 - coenzyme F420-reducing hydrogenase, alpha subunit, at 3,238,215 to 3,239,675
_3027
Dsui_3028: Dsui_3028 - coenzyme F420-reducing hydrogenase, gamma subunit, at 3,239,688 to 3,240,245
_3028
Dsui_3029: Dsui_3029 - NADH:ubiquinone oxidoreductase chain G-like protein, at 3,240,242 to 3,240,955
_3029
Dsui_3030: Dsui_3030 - NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit, at 3,240,952 to 3,242,760
_3030
Position (kb)
3239
3240
3241 Strain fitness (log2 ratio)
-2
-1
0
1 at 3238.777 kb on - strand, within Dsui_3027 at 3238.953 kb on - strand, within Dsui_3027 at 3238.978 kb on - strand, within Dsui_3027 at 3238.994 kb on + strand, within Dsui_3027 at 3239.002 kb on - strand, within Dsui_3027 at 3239.034 kb on - strand, within Dsui_3027 at 3239.060 kb on - strand, within Dsui_3027 at 3239.259 kb on - strand, within Dsui_3027 at 3239.417 kb on - strand, within Dsui_3027 at 3239.599 kb on + strand at 3239.600 kb on - strand at 3239.832 kb on - strand, within Dsui_3028 at 3239.913 kb on - strand, within Dsui_3028 at 3239.939 kb on - strand, within Dsui_3028 at 3240.113 kb on - strand, within Dsui_3028 at 3240.364 kb on - strand, within Dsui_3029 at 3240.414 kb on + strand, within Dsui_3029 at 3240.695 kb on - strand, within Dsui_3029 at 3240.726 kb on + strand at 3240.979 kb on - strand at 3241.046 kb on - strand at 3241.142 kb on - strand, within Dsui_3030
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM remove 3,238,777 - Dsui_3027 0.38 -0.7 3,238,953 - Dsui_3027 0.51 -2.4 3,238,978 - Dsui_3027 0.52 +0.5 3,238,994 + Dsui_3027 0.53 -0.3 3,239,002 - Dsui_3027 0.54 -0.6 3,239,034 - Dsui_3027 0.56 -0.1 3,239,060 - Dsui_3027 0.58 -0.2 3,239,259 - Dsui_3027 0.71 +0.1 3,239,417 - Dsui_3027 0.82 +1.1 3,239,599 + -0.2 3,239,600 - -0.2 3,239,832 - Dsui_3028 0.26 -0.2 3,239,913 - Dsui_3028 0.40 -0.9 3,239,939 - Dsui_3028 0.45 -1.3 3,240,113 - Dsui_3028 0.76 -0.4 3,240,364 - Dsui_3029 0.17 -1.4 3,240,414 + Dsui_3029 0.24 -1.6 3,240,695 - Dsui_3029 0.63 -0.1 3,240,726 + +0.0 3,240,979 - -0.2 3,241,046 - +0.3 3,241,142 - Dsui_3030 0.11 +0.2
Or see this region's nucleotide sequence