Experiment: rich media with hydrogen peroxide 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2983 and Dsui_2984 are separated by 12 nucleotides Dsui_2984 and Dsui_2985 are separated by 273 nucleotides Dsui_2985 and Dsui_2986 are separated by 19 nucleotides
Dsui_2983: Dsui_2983 - electron transport complex, RnfABCDGE type, G subunit, at 3,189,934 to 3,190,611
_2983
Dsui_2984: Dsui_2984 - electron transport complex, RnfABCDGE type, E subunit, at 3,190,624 to 3,191,313
_2984
Dsui_2985: Dsui_2985 - endonuclease III, at 3,191,587 to 3,192,237
_2985
Dsui_2986: Dsui_2986 - hypothetical protein, at 3,192,257 to 3,193,336
_2986
Position (kb)
3191
3192
3193 Strain fitness (log2 ratio)
-1
0
1
2 at 3190.590 kb on + strand at 3190.910 kb on + strand, within Dsui_2984 at 3191.282 kb on - strand at 3191.292 kb on + strand at 3191.319 kb on + strand at 3191.379 kb on - strand at 3191.391 kb on + strand at 3191.517 kb on - strand at 3191.519 kb on + strand at 3191.519 kb on - strand at 3191.577 kb on + strand at 3191.585 kb on - strand at 3191.697 kb on + strand, within Dsui_2985 at 3191.727 kb on + strand, within Dsui_2985 at 3191.735 kb on - strand, within Dsui_2985 at 3191.742 kb on - strand, within Dsui_2985 at 3192.065 kb on + strand, within Dsui_2985 at 3192.075 kb on + strand, within Dsui_2985 at 3192.114 kb on + strand, within Dsui_2985 at 3192.142 kb on - strand, within Dsui_2985 at 3192.143 kb on + strand, within Dsui_2985 at 3192.201 kb on - strand at 3192.213 kb on - strand at 3192.223 kb on - strand at 3192.226 kb on + strand at 3192.231 kb on + strand at 3192.231 kb on + strand at 3192.231 kb on + strand at 3192.231 kb on + strand at 3192.239 kb on - strand at 3192.239 kb on - strand at 3192.239 kb on - strand at 3192.301 kb on - strand at 3192.379 kb on + strand, within Dsui_2986 at 3192.382 kb on - strand, within Dsui_2986 at 3192.450 kb on + strand, within Dsui_2986 at 3192.487 kb on - strand, within Dsui_2986 at 3192.496 kb on + strand, within Dsui_2986 at 3192.717 kb on - strand at 3192.884 kb on - strand at 3192.924 kb on - strand at 3192.947 kb on + strand, within Dsui_2986 at 3192.955 kb on - strand at 3192.956 kb on - strand at 3192.965 kb on - strand at 3192.972 kb on + strand, within Dsui_2986 at 3193.048 kb on + strand, within Dsui_2986 at 3193.119 kb on + strand, within Dsui_2986 at 3193.140 kb on + strand, within Dsui_2986 at 3193.153 kb on - strand, within Dsui_2986
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM remove 3,190,590 + -0.4 3,190,910 + Dsui_2984 0.41 -1.6 3,191,282 - -0.2 3,191,292 + +0.4 3,191,319 + +0.3 3,191,379 - +0.7 3,191,391 + -0.2 3,191,517 - +0.6 3,191,519 + +0.3 3,191,519 - -0.3 3,191,577 + +0.5 3,191,585 - +0.1 3,191,697 + Dsui_2985 0.17 -0.2 3,191,727 + Dsui_2985 0.22 +0.4 3,191,735 - Dsui_2985 0.23 -0.9 3,191,742 - Dsui_2985 0.24 -0.3 3,192,065 + Dsui_2985 0.73 -1.0 3,192,075 + Dsui_2985 0.75 -0.1 3,192,114 + Dsui_2985 0.81 +0.8 3,192,142 - Dsui_2985 0.85 -0.2 3,192,143 + Dsui_2985 0.85 -0.5 3,192,201 - -1.6 3,192,213 - -0.7 3,192,223 - -0.5 3,192,226 + +0.3 3,192,231 + -0.4 3,192,231 + -0.7 3,192,231 + +0.4 3,192,231 + +1.8 3,192,239 - -0.8 3,192,239 - +2.2 3,192,239 - -0.2 3,192,301 - -1.0 3,192,379 + Dsui_2986 0.11 +0.2 3,192,382 - Dsui_2986 0.12 +0.7 3,192,450 + Dsui_2986 0.18 -0.5 3,192,487 - Dsui_2986 0.21 -1.1 3,192,496 + Dsui_2986 0.22 -1.2 3,192,717 - +0.3 3,192,884 - +0.0 3,192,924 - +0.6 3,192,947 + Dsui_2986 0.64 -0.7 3,192,955 - +1.6 3,192,956 - +0.0 3,192,965 - +0.0 3,192,972 + Dsui_2986 0.66 +1.0 3,193,048 + Dsui_2986 0.73 +0.3 3,193,119 + Dsui_2986 0.80 +0.2 3,193,140 + Dsui_2986 0.82 +0.2 3,193,153 - Dsui_2986 0.83 -0.1
Or see this region's nucleotide sequence