Experiment: rich media with hydrogen peroxide 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2958 and Dsui_2959 are separated by 13 nucleotides Dsui_2959 and Dsui_2960 are separated by 9 nucleotides Dsui_2960 and Dsui_2961 are separated by 3 nucleotides Dsui_2961 and Dsui_2962 overlap by 11 nucleotides
Dsui_2958: Dsui_2958 - cobalt transport protein ATP-binding subunit, at 3,166,401 to 3,167,240
_2958
Dsui_2959: Dsui_2959 - precorrin-4 C11-methyltransferase, at 3,167,254 to 3,168,057
_2959
Dsui_2960: Dsui_2960 - hypothetical protein, at 3,168,067 to 3,169,053
_2960
Dsui_2961: Dsui_2961 - precorrin isomerase, at 3,169,057 to 3,169,737
_2961
Dsui_2962: Dsui_2962 - cobalamin biosynthesis protein CbiD, at 3,169,727 to 3,170,923
_2962
Position (kb)
3168
3169
3170 Strain fitness (log2 ratio)
-1
0
1
2 at 3167.074 kb on + strand, within Dsui_2958 at 3167.197 kb on + strand at 3167.385 kb on - strand, within Dsui_2959 at 3167.503 kb on + strand, within Dsui_2959 at 3167.580 kb on - strand at 3167.726 kb on + strand, within Dsui_2959 at 3167.741 kb on + strand, within Dsui_2959 at 3167.749 kb on - strand at 3167.841 kb on + strand, within Dsui_2959 at 3167.934 kb on + strand, within Dsui_2959 at 3167.942 kb on - strand, within Dsui_2959 at 3168.011 kb on + strand at 3168.051 kb on - strand at 3168.100 kb on - strand at 3168.321 kb on + strand, within Dsui_2960 at 3168.321 kb on + strand, within Dsui_2960 at 3168.329 kb on - strand, within Dsui_2960 at 3168.455 kb on + strand, within Dsui_2960 at 3168.458 kb on - strand, within Dsui_2960 at 3168.585 kb on - strand, within Dsui_2960 at 3168.642 kb on + strand, within Dsui_2960 at 3168.788 kb on + strand, within Dsui_2960 at 3169.054 kb on + strand at 3169.089 kb on + strand at 3169.097 kb on - strand at 3169.198 kb on + strand, within Dsui_2961 at 3169.278 kb on + strand, within Dsui_2961 at 3169.286 kb on - strand, within Dsui_2961 at 3169.404 kb on + strand, within Dsui_2961 at 3169.560 kb on + strand at 3169.640 kb on - strand at 3169.703 kb on + strand at 3169.716 kb on - strand at 3169.754 kb on + strand at 3169.754 kb on + strand at 3169.886 kb on - strand, within Dsui_2962 at 3169.886 kb on - strand, within Dsui_2962 at 3169.943 kb on - strand, within Dsui_2962
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM remove 3,167,074 + Dsui_2958 0.80 +0.4 3,167,197 + -0.9 3,167,385 - Dsui_2959 0.16 +0.9 3,167,503 + Dsui_2959 0.31 +0.2 3,167,580 - +2.6 3,167,726 + Dsui_2959 0.59 +0.7 3,167,741 + Dsui_2959 0.61 +0.2 3,167,749 - +1.0 3,167,841 + Dsui_2959 0.73 +0.5 3,167,934 + Dsui_2959 0.85 +0.4 3,167,942 - Dsui_2959 0.86 -1.7 3,168,011 + -0.5 3,168,051 - -0.3 3,168,100 - +1.9 3,168,321 + Dsui_2960 0.26 +0.3 3,168,321 + Dsui_2960 0.26 +0.4 3,168,329 - Dsui_2960 0.27 +0.1 3,168,455 + Dsui_2960 0.39 +0.2 3,168,458 - Dsui_2960 0.40 -0.1 3,168,585 - Dsui_2960 0.52 +0.4 3,168,642 + Dsui_2960 0.58 +0.7 3,168,788 + Dsui_2960 0.73 +0.5 3,169,054 + +0.3 3,169,089 + +0.6 3,169,097 - +1.6 3,169,198 + Dsui_2961 0.21 +0.6 3,169,278 + Dsui_2961 0.32 -0.3 3,169,286 - Dsui_2961 0.34 -0.6 3,169,404 + Dsui_2961 0.51 -0.0 3,169,560 + -1.0 3,169,640 - +1.6 3,169,703 + -0.0 3,169,716 - +0.0 3,169,754 + +0.2 3,169,754 + +0.8 3,169,886 - Dsui_2962 0.13 -0.2 3,169,886 - Dsui_2962 0.13 -0.7 3,169,943 - Dsui_2962 0.18 +0.6
Or see this region's nucleotide sequence