Experiment: rich media with hydrogen peroxide 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2868 and Dsui_2869 overlap by 17 nucleotides Dsui_2869 and Dsui_2870 are separated by 99 nucleotides
Dsui_2868: Dsui_2868 - tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain protein, at 3,061,891 to 3,063,858
_2868
Dsui_2869: Dsui_2869 - transcriptional regulator, at 3,063,842 to 3,064,813
_2869
Dsui_2870: Dsui_2870 - putative permease, at 3,064,913 to 3,065,839
_2870
Position (kb)
3063
3064
3065 Strain fitness (log2 ratio)
-1
0
1
2 at 3062.893 kb on + strand at 3062.956 kb on + strand, within Dsui_2868 at 3063.078 kb on - strand, within Dsui_2868 at 3063.130 kb on - strand at 3063.243 kb on + strand, within Dsui_2868 at 3063.313 kb on + strand at 3063.545 kb on + strand, within Dsui_2868 at 3063.569 kb on + strand, within Dsui_2868 at 3063.668 kb on + strand at 3063.668 kb on + strand at 3063.736 kb on + strand at 3063.794 kb on + strand at 3063.794 kb on + strand at 3063.825 kb on + strand at 3063.833 kb on - strand at 3063.946 kb on - strand, within Dsui_2869 at 3063.947 kb on - strand, within Dsui_2869 at 3064.002 kb on + strand, within Dsui_2869 at 3064.194 kb on - strand, within Dsui_2869 at 3064.356 kb on + strand, within Dsui_2869 at 3064.465 kb on + strand, within Dsui_2869 at 3064.545 kb on - strand, within Dsui_2869 at 3064.632 kb on - strand, within Dsui_2869 at 3064.633 kb on + strand at 3064.881 kb on - strand at 3065.006 kb on + strand, within Dsui_2870 at 3065.133 kb on + strand, within Dsui_2870 at 3065.154 kb on + strand, within Dsui_2870 at 3065.267 kb on + strand, within Dsui_2870 at 3065.326 kb on + strand, within Dsui_2870 at 3065.467 kb on + strand, within Dsui_2870 at 3065.482 kb on + strand, within Dsui_2870 at 3065.594 kb on + strand, within Dsui_2870 at 3065.757 kb on + strand at 3065.805 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM remove 3,062,893 + -0.2 3,062,956 + Dsui_2868 0.54 +1.1 3,063,078 - Dsui_2868 0.60 +0.1 3,063,130 - +1.1 3,063,243 + Dsui_2868 0.69 +0.1 3,063,313 + +0.6 3,063,545 + Dsui_2868 0.84 +1.6 3,063,569 + Dsui_2868 0.85 +0.4 3,063,668 + +0.7 3,063,668 + +0.6 3,063,736 + +2.6 3,063,794 + +1.6 3,063,794 + +0.6 3,063,825 + +2.1 3,063,833 - +1.6 3,063,946 - Dsui_2869 0.11 +1.6 3,063,947 - Dsui_2869 0.11 +0.8 3,064,002 + Dsui_2869 0.16 +0.4 3,064,194 - Dsui_2869 0.36 +0.8 3,064,356 + Dsui_2869 0.53 -0.1 3,064,465 + Dsui_2869 0.64 +0.3 3,064,545 - Dsui_2869 0.72 +0.8 3,064,632 - Dsui_2869 0.81 +0.0 3,064,633 + +0.6 3,064,881 - +1.6 3,065,006 + Dsui_2870 0.10 +0.6 3,065,133 + Dsui_2870 0.24 +1.0 3,065,154 + Dsui_2870 0.26 +0.6 3,065,267 + Dsui_2870 0.38 -1.3 3,065,326 + Dsui_2870 0.45 +0.6 3,065,467 + Dsui_2870 0.60 -0.4 3,065,482 + Dsui_2870 0.61 +0.6 3,065,594 + Dsui_2870 0.73 +0.6 3,065,757 + -0.4 3,065,805 + +1.1
Or see this region's nucleotide sequence