Strain Fitness in Dechlorosoma suillum PS around Dsui_2843

Experiment: rich media with hydrogen peroxide 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2841 and Dsui_2842 overlap by 4 nucleotidesDsui_2842 and Dsui_2843 are separated by 536 nucleotides Dsui_2841: Dsui_2841 - His-Xaa-Ser repeat-associated upstream radical SAM protein, at 3,017,645 to 3,019,105 _2841 Dsui_2842: Dsui_2842 - radical SAM pair-associated protein, at 3,019,102 to 3,019,392 _2842 Dsui_2843: Dsui_2843 - hypothetical protein, at 3,019,929 to 3,021,314 _2843 Position (kb) 3019 3020 3021 3022Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3018.930 kb on + strand, within Dsui_2841at 3018.938 kb on - strand, within Dsui_2841at 3018.956 kb on - strand, within Dsui_2841at 3018.986 kb on + strandat 3019.005 kb on + strandat 3019.020 kb on + strandat 3019.020 kb on + strandat 3019.028 kb on - strandat 3019.028 kb on - strandat 3019.058 kb on + strandat 3019.058 kb on + strandat 3019.068 kb on + strandat 3019.081 kb on + strandat 3019.081 kb on + strandat 3019.089 kb on + strandat 3019.113 kb on + strandat 3019.118 kb on + strandat 3019.118 kb on + strandat 3019.129 kb on + strandat 3019.130 kb on + strandat 3019.130 kb on + strandat 3019.130 kb on + strandat 3019.135 kb on + strand, within Dsui_2842at 3019.138 kb on - strand, within Dsui_2842at 3019.138 kb on - strand, within Dsui_2842at 3019.208 kb on + strand, within Dsui_2842at 3019.219 kb on + strand, within Dsui_2842at 3019.249 kb on + strand, within Dsui_2842at 3019.257 kb on - strandat 3019.257 kb on - strand, within Dsui_2842at 3019.312 kb on - strand, within Dsui_2842at 3019.315 kb on - strand, within Dsui_2842at 3019.344 kb on - strand, within Dsui_2842at 3019.368 kb on + strandat 3019.381 kb on - strandat 3019.381 kb on - strandat 3019.400 kb on - strandat 3019.446 kb on - strandat 3019.451 kb on + strandat 3019.459 kb on - strandat 3019.459 kb on - strandat 3019.482 kb on + strandat 3019.488 kb on - strandat 3019.497 kb on - strandat 3019.499 kb on - strandat 3019.534 kb on - strandat 3019.540 kb on + strandat 3019.543 kb on - strandat 3019.562 kb on - strandat 3019.567 kb on + strandat 3019.595 kb on - strandat 3019.625 kb on + strandat 3019.633 kb on - strandat 3019.633 kb on - strandat 3019.681 kb on - strandat 3019.712 kb on + strandat 3019.772 kb on + strandat 3019.882 kb on - strandat 3019.899 kb on + strandat 3019.899 kb on + strandat 3019.899 kb on + strandat 3019.907 kb on - strandat 3019.907 kb on - strandat 3019.914 kb on - strandat 3019.953 kb on + strandat 3019.958 kb on + strandat 3019.958 kb on + strandat 3019.963 kb on + strandat 3020.012 kb on + strandat 3020.012 kb on + strandat 3020.012 kb on + strandat 3020.012 kb on + strandat 3020.012 kb on + strandat 3020.012 kb on + strandat 3020.012 kb on + strandat 3020.017 kb on + strandat 3020.020 kb on - strandat 3020.020 kb on - strandat 3020.020 kb on - strandat 3020.020 kb on - strandat 3020.020 kb on - strandat 3020.020 kb on - strandat 3020.020 kb on - strandat 3020.022 kb on + strandat 3020.022 kb on + strandat 3020.027 kb on + strandat 3020.030 kb on - strandat 3020.030 kb on - strandat 3020.030 kb on - strandat 3020.048 kb on + strandat 3020.056 kb on - strandat 3020.060 kb on + strandat 3020.060 kb on + strandat 3020.068 kb on - strand, within Dsui_2843at 3020.068 kb on - strand, within Dsui_2843at 3020.135 kb on + strand, within Dsui_2843at 3020.202 kb on + strand, within Dsui_2843at 3020.202 kb on + strand, within Dsui_2843at 3020.202 kb on + strand, within Dsui_2843at 3020.202 kb on + strand, within Dsui_2843at 3020.202 kb on + strand, within Dsui_2843at 3020.202 kb on + strand, within Dsui_2843at 3020.202 kb on + strand, within Dsui_2843at 3020.206 kb on + strand, within Dsui_2843at 3020.210 kb on - strand, within Dsui_2843at 3020.210 kb on - strand, within Dsui_2843at 3020.212 kb on + strand, within Dsui_2843at 3020.212 kb on + strand, within Dsui_2843at 3020.212 kb on + strand, within Dsui_2843at 3020.247 kb on - strand, within Dsui_2843at 3020.264 kb on + strand, within Dsui_2843at 3020.272 kb on - strand, within Dsui_2843at 3020.272 kb on - strand, within Dsui_2843at 3020.288 kb on + strand, within Dsui_2843at 3020.301 kb on - strand, within Dsui_2843at 3020.301 kb on - strand, within Dsui_2843at 3020.306 kb on - strand, within Dsui_2843at 3020.310 kb on + strand, within Dsui_2843at 3020.319 kb on + strand, within Dsui_2843at 3020.332 kb on - strandat 3020.371 kb on - strand, within Dsui_2843at 3020.371 kb on - strand, within Dsui_2843at 3020.372 kb on - strand, within Dsui_2843at 3020.395 kb on - strand, within Dsui_2843at 3020.411 kb on - strand, within Dsui_2843at 3020.420 kb on + strand, within Dsui_2843at 3020.420 kb on + strand, within Dsui_2843at 3020.427 kb on - strand, within Dsui_2843at 3020.450 kb on + strand, within Dsui_2843at 3020.462 kb on + strand, within Dsui_2843at 3020.462 kb on + strand, within Dsui_2843at 3020.472 kb on + strand, within Dsui_2843at 3020.480 kb on - strand, within Dsui_2843at 3020.480 kb on - strand, within Dsui_2843at 3020.502 kb on + strand, within Dsui_2843at 3020.508 kb on - strandat 3020.508 kb on - strand, within Dsui_2843at 3020.508 kb on - strand, within Dsui_2843at 3020.518 kb on + strand, within Dsui_2843at 3020.523 kb on + strand, within Dsui_2843at 3020.531 kb on - strand, within Dsui_2843at 3020.540 kb on + strand, within Dsui_2843at 3020.563 kb on + strand, within Dsui_2843at 3020.563 kb on + strand, within Dsui_2843at 3020.563 kb on + strand, within Dsui_2843at 3020.564 kb on + strandat 3020.571 kb on - strand, within Dsui_2843at 3020.572 kb on - strand, within Dsui_2843at 3020.602 kb on + strand, within Dsui_2843at 3020.603 kb on - strand, within Dsui_2843at 3020.616 kb on - strand, within Dsui_2843at 3020.616 kb on - strand, within Dsui_2843at 3020.621 kb on - strand, within Dsui_2843at 3020.621 kb on - strand, within Dsui_2843at 3020.621 kb on - strand, within Dsui_2843at 3020.640 kb on + strandat 3020.690 kb on - strand, within Dsui_2843at 3020.780 kb on - strand, within Dsui_2843at 3020.836 kb on - strand, within Dsui_2843at 3020.838 kb on + strand, within Dsui_2843at 3020.838 kb on + strandat 3020.838 kb on + strand, within Dsui_2843at 3020.838 kb on + strand, within Dsui_2843at 3020.838 kb on + strand, within Dsui_2843at 3020.838 kb on + strandat 3020.846 kb on - strand, within Dsui_2843at 3020.846 kb on - strand, within Dsui_2843at 3020.846 kb on - strand, within Dsui_2843at 3020.846 kb on - strand, within Dsui_2843at 3020.846 kb on - strand, within Dsui_2843at 3020.881 kb on - strand, within Dsui_2843at 3020.889 kb on + strand, within Dsui_2843at 3020.889 kb on + strandat 3020.889 kb on + strand, within Dsui_2843at 3020.891 kb on - strand, within Dsui_2843at 3020.898 kb on - strand, within Dsui_2843at 3020.955 kb on + strand, within Dsui_2843at 3020.955 kb on + strand, within Dsui_2843at 3020.962 kb on + strand, within Dsui_2843at 3020.963 kb on - strand, within Dsui_2843at 3020.963 kb on - strand, within Dsui_2843at 3020.977 kb on + strand, within Dsui_2843at 3020.986 kb on + strand, within Dsui_2843at 3021.031 kb on - strand, within Dsui_2843at 3021.032 kb on + strand, within Dsui_2843at 3021.040 kb on - strand, within Dsui_2843at 3021.041 kb on + strand, within Dsui_2843at 3021.071 kb on - strandat 3021.078 kb on - strand, within Dsui_2843at 3021.111 kb on - strand, within Dsui_2843at 3021.128 kb on + strand, within Dsui_2843at 3021.145 kb on - strand, within Dsui_2843at 3021.145 kb on - strand, within Dsui_2843at 3021.165 kb on - strand, within Dsui_2843at 3021.167 kb on + strand, within Dsui_2843at 3021.179 kb on - strandat 3021.189 kb on + strandat 3021.191 kb on - strandat 3021.221 kb on + strandat 3021.229 kb on - strandat 3021.229 kb on - strandat 3021.254 kb on - strandat 3021.281 kb on + strandat 3021.331 kb on + strandat 3021.341 kb on + strandat 3021.349 kb on - strandat 3021.349 kb on - strandat 3021.349 kb on - strandat 3021.358 kb on - strandat 3021.419 kb on + strandat 3021.424 kb on + strandat 3021.427 kb on - strandat 3021.431 kb on + strandat 3021.431 kb on + strandat 3021.431 kb on + strandat 3021.431 kb on + strandat 3021.439 kb on - strandat 3021.439 kb on - strandat 3021.439 kb on - strandat 3021.439 kb on - strandat 3021.447 kb on - strandat 3021.450 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM
remove
3,018,930 + Dsui_2841 0.88 -1.1
3,018,938 - Dsui_2841 0.89 -1.0
3,018,956 - Dsui_2841 0.90 -1.7
3,018,986 + -0.3
3,019,005 + -0.2
3,019,020 + +0.3
3,019,020 + -0.8
3,019,028 - +0.7
3,019,028 - -0.6
3,019,058 + -0.5
3,019,058 + -0.9
3,019,068 + +0.4
3,019,081 + -0.5
3,019,081 + +1.0
3,019,089 + -0.4
3,019,113 + -0.5
3,019,118 + -0.3
3,019,118 + -0.7
3,019,129 + -0.5
3,019,130 + -0.3
3,019,130 + -0.1
3,019,130 + -0.6
3,019,135 + Dsui_2842 0.11 -0.1
3,019,138 - Dsui_2842 0.12 -0.2
3,019,138 - Dsui_2842 0.12 +0.1
3,019,208 + Dsui_2842 0.36 -0.8
3,019,219 + Dsui_2842 0.40 -0.2
3,019,249 + Dsui_2842 0.51 -0.3
3,019,257 - -0.7
3,019,257 - Dsui_2842 0.53 -0.8
3,019,312 - Dsui_2842 0.72 -0.6
3,019,315 - Dsui_2842 0.73 -1.3
3,019,344 - Dsui_2842 0.83 +0.4
3,019,368 + -0.7
3,019,381 - -1.2
3,019,381 - +0.5
3,019,400 - -0.9
3,019,446 - -0.3
3,019,451 + +0.7
3,019,459 - -0.3
3,019,459 - -0.9
3,019,482 + +1.7
3,019,488 - -0.5
3,019,497 - -0.4
3,019,499 - -0.4
3,019,534 - -0.5
3,019,540 + +0.1
3,019,543 - -0.6
3,019,562 - -0.3
3,019,567 + -0.1
3,019,595 - -0.8
3,019,625 + -1.6
3,019,633 - -0.5
3,019,633 - -0.6
3,019,681 - -0.4
3,019,712 + +0.7
3,019,772 + -0.6
3,019,882 - -0.4
3,019,899 + -0.5
3,019,899 + +0.1
3,019,899 + -0.5
3,019,907 - -0.7
3,019,907 - -0.5
3,019,914 - -0.5
3,019,953 + -0.3
3,019,958 + -0.3
3,019,958 + +0.5
3,019,963 + -0.4
3,020,012 + +1.2
3,020,012 + -0.0
3,020,012 + -0.6
3,020,012 + +0.1
3,020,012 + -0.4
3,020,012 + -0.2
3,020,012 + +0.4
3,020,017 + +0.2
3,020,020 - +0.2
3,020,020 - -1.6
3,020,020 - -0.3
3,020,020 - -0.3
3,020,020 - -0.9
3,020,020 - -1.3
3,020,020 - -0.7
3,020,022 + -0.4
3,020,022 + -2.3
3,020,027 + -1.5
3,020,030 - -0.3
3,020,030 - +0.3
3,020,030 - -2.3
3,020,048 + -0.7
3,020,056 - -0.2
3,020,060 + +1.1
3,020,060 + +0.3
3,020,068 - Dsui_2843 0.10 +0.2
3,020,068 - Dsui_2843 0.10 +0.2
3,020,135 + Dsui_2843 0.15 -1.9
3,020,202 + Dsui_2843 0.20 -1.5
3,020,202 + Dsui_2843 0.20 -1.4
3,020,202 + Dsui_2843 0.20 -0.3
3,020,202 + Dsui_2843 0.20 +0.1
3,020,202 + Dsui_2843 0.20 -1.0
3,020,202 + Dsui_2843 0.20 -0.9
3,020,202 + Dsui_2843 0.20 -0.7
3,020,206 + Dsui_2843 0.20 -1.0
3,020,210 - Dsui_2843 0.20 -0.2
3,020,210 - Dsui_2843 0.20 -0.6
3,020,212 + Dsui_2843 0.20 -1.9
3,020,212 + Dsui_2843 0.20 -0.3
3,020,212 + Dsui_2843 0.20 -0.1
3,020,247 - Dsui_2843 0.23 -2.5
3,020,264 + Dsui_2843 0.24 -0.1
3,020,272 - Dsui_2843 0.25 +0.4
3,020,272 - Dsui_2843 0.25 -0.8
3,020,288 + Dsui_2843 0.26 -0.8
3,020,301 - Dsui_2843 0.27 -0.2
3,020,301 - Dsui_2843 0.27 -0.7
3,020,306 - Dsui_2843 0.27 -0.8
3,020,310 + Dsui_2843 0.27 -1.1
3,020,319 + Dsui_2843 0.28 -0.1
3,020,332 - -0.7
3,020,371 - Dsui_2843 0.32 -0.4
3,020,371 - Dsui_2843 0.32 -0.7
3,020,372 - Dsui_2843 0.32 -0.8
3,020,395 - Dsui_2843 0.34 -0.2
3,020,411 - Dsui_2843 0.35 +0.7
3,020,420 + Dsui_2843 0.35 -0.3
3,020,420 + Dsui_2843 0.35 -0.3
3,020,427 - Dsui_2843 0.36 -0.2
3,020,450 + Dsui_2843 0.38 -0.4
3,020,462 + Dsui_2843 0.38 -0.3
3,020,462 + Dsui_2843 0.38 -2.4
3,020,472 + Dsui_2843 0.39 -0.1
3,020,480 - Dsui_2843 0.40 -0.1
3,020,480 - Dsui_2843 0.40 -1.2
3,020,502 + Dsui_2843 0.41 -2.5
3,020,508 - +0.4
3,020,508 - Dsui_2843 0.42 -1.2
3,020,508 - Dsui_2843 0.42 -1.5
3,020,518 + Dsui_2843 0.42 -0.6
3,020,523 + Dsui_2843 0.43 -1.0
3,020,531 - Dsui_2843 0.43 -0.1
3,020,540 + Dsui_2843 0.44 -0.3
3,020,563 + Dsui_2843 0.46 -1.6
3,020,563 + Dsui_2843 0.46 -0.4
3,020,563 + Dsui_2843 0.46 -3.0
3,020,564 + -0.7
3,020,571 - Dsui_2843 0.46 +0.2
3,020,572 - Dsui_2843 0.46 -0.3
3,020,602 + Dsui_2843 0.49 -1.0
3,020,603 - Dsui_2843 0.49 -0.0
3,020,616 - Dsui_2843 0.50 -0.1
3,020,616 - Dsui_2843 0.50 +0.1
3,020,621 - Dsui_2843 0.50 -0.4
3,020,621 - Dsui_2843 0.50 +0.2
3,020,621 - Dsui_2843 0.50 -0.3
3,020,640 + +1.7
3,020,690 - Dsui_2843 0.55 -1.3
3,020,780 - Dsui_2843 0.61 +0.3
3,020,836 - Dsui_2843 0.65 -0.8
3,020,838 + Dsui_2843 0.66 -0.2
3,020,838 + +0.7
3,020,838 + Dsui_2843 0.66 +1.0
3,020,838 + Dsui_2843 0.66 -0.2
3,020,838 + Dsui_2843 0.66 +0.1
3,020,838 + -0.7
3,020,846 - Dsui_2843 0.66 -1.1
3,020,846 - Dsui_2843 0.66 -0.3
3,020,846 - Dsui_2843 0.66 +0.2
3,020,846 - Dsui_2843 0.66 -0.3
3,020,846 - Dsui_2843 0.66 +0.3
3,020,881 - Dsui_2843 0.69 -0.3
3,020,889 + Dsui_2843 0.69 -0.5
3,020,889 + +0.9
3,020,889 + Dsui_2843 0.69 +0.3
3,020,891 - Dsui_2843 0.69 +0.4
3,020,898 - Dsui_2843 0.70 -0.8
3,020,955 + Dsui_2843 0.74 +2.3
3,020,955 + Dsui_2843 0.74 -0.4
3,020,962 + Dsui_2843 0.75 -0.5
3,020,963 - Dsui_2843 0.75 +0.3
3,020,963 - Dsui_2843 0.75 -0.0
3,020,977 + Dsui_2843 0.76 -0.7
3,020,986 + Dsui_2843 0.76 -0.3
3,021,031 - Dsui_2843 0.80 -0.3
3,021,032 + Dsui_2843 0.80 -0.3
3,021,040 - Dsui_2843 0.80 -0.3
3,021,041 + Dsui_2843 0.80 -0.6
3,021,071 - -0.2
3,021,078 - Dsui_2843 0.83 -0.4
3,021,111 - Dsui_2843 0.85 +0.4
3,021,128 + Dsui_2843 0.87 +0.7
3,021,145 - Dsui_2843 0.88 -0.7
3,021,145 - Dsui_2843 0.88 +0.2
3,021,165 - Dsui_2843 0.89 -0.3
3,021,167 + Dsui_2843 0.89 -0.6
3,021,179 - -0.5
3,021,189 + -0.7
3,021,191 - -1.3
3,021,221 + +0.8
3,021,229 - +0.3
3,021,229 - -0.9
3,021,254 - -0.0
3,021,281 + -2.9
3,021,331 + -2.4
3,021,341 + -0.3
3,021,349 - -0.4
3,021,349 - +0.4
3,021,349 - -0.9
3,021,358 - -0.7
3,021,419 + -0.9
3,021,424 + +0.8
3,021,427 - +0.2
3,021,431 + -1.3
3,021,431 + -1.3
3,021,431 + -0.4
3,021,431 + -0.3
3,021,439 - -2.3
3,021,439 - -1.5
3,021,439 - +0.1
3,021,439 - -0.8
3,021,447 - -0.7
3,021,450 - -0.5

Or see this region's nucleotide sequence