Strain Fitness in Dechlorosoma suillum PS around Dsui_2829

Experiment: rich media with hydrogen peroxide 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2828 and Dsui_2829 are separated by 162 nucleotidesDsui_2829 and Dsui_2830 overlap by 4 nucleotides Dsui_2828: Dsui_2828 - hypothetical protein, at 3,005,060 to 3,006,079 _2828 Dsui_2829: Dsui_2829 - hypothetical protein, at 3,006,242 to 3,006,568 _2829 Dsui_2830: Dsui_2830 - adenine specific DNA methylase Mod, at 3,006,565 to 3,007,731 _2830 Position (kb) 3006 3007Strain fitness (log2 ratio) -1 0 1at 3005.248 kb on - strand, within Dsui_2828at 3005.280 kb on + strand, within Dsui_2828at 3005.297 kb on + strandat 3005.472 kb on + strand, within Dsui_2828at 3005.572 kb on + strand, within Dsui_2828at 3005.636 kb on + strand, within Dsui_2828at 3005.644 kb on - strandat 3005.644 kb on - strand, within Dsui_2828at 3005.665 kb on + strand, within Dsui_2828at 3005.724 kb on - strandat 3005.764 kb on + strand, within Dsui_2828at 3005.825 kb on - strand, within Dsui_2828at 3005.851 kb on + strand, within Dsui_2828at 3005.862 kb on + strand, within Dsui_2828at 3005.971 kb on - strand, within Dsui_2828at 3005.978 kb on - strandat 3005.978 kb on - strandat 3005.982 kb on + strandat 3005.990 kb on - strandat 3005.990 kb on - strandat 3005.992 kb on + strandat 3005.992 kb on + strandat 3005.992 kb on + strandat 3006.212 kb on + strandat 3006.305 kb on + strand, within Dsui_2829at 3006.310 kb on + strand, within Dsui_2829at 3006.310 kb on + strand, within Dsui_2829at 3006.310 kb on + strand, within Dsui_2829at 3006.322 kb on + strand, within Dsui_2829at 3006.322 kb on + strand, within Dsui_2829at 3006.322 kb on + strand, within Dsui_2829at 3006.328 kb on + strand, within Dsui_2829at 3006.436 kb on + strand, within Dsui_2829at 3006.479 kb on + strand, within Dsui_2829at 3006.498 kb on + strand, within Dsui_2829at 3006.547 kb on + strandat 3006.548 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM
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3,005,248 - Dsui_2828 0.18 +0.7
3,005,280 + Dsui_2828 0.22 +0.8
3,005,297 + +0.1
3,005,472 + Dsui_2828 0.40 -1.7
3,005,572 + Dsui_2828 0.50 +0.5
3,005,636 + Dsui_2828 0.56 -1.5
3,005,644 - -0.9
3,005,644 - Dsui_2828 0.57 -1.4
3,005,665 + Dsui_2828 0.59 -0.6
3,005,724 - -0.6
3,005,764 + Dsui_2828 0.69 -0.5
3,005,825 - Dsui_2828 0.75 +0.5
3,005,851 + Dsui_2828 0.78 -1.4
3,005,862 + Dsui_2828 0.79 -0.0
3,005,971 - Dsui_2828 0.89 -0.9
3,005,978 - -0.6
3,005,978 - -0.6
3,005,982 + -0.4
3,005,990 - -0.5
3,005,990 - -0.1
3,005,992 + +0.8
3,005,992 + -0.9
3,005,992 + +0.7
3,006,212 + -0.3
3,006,305 + Dsui_2829 0.19 +0.2
3,006,310 + Dsui_2829 0.21 +0.1
3,006,310 + Dsui_2829 0.21 -0.2
3,006,310 + Dsui_2829 0.21 -0.0
3,006,322 + Dsui_2829 0.24 -0.3
3,006,322 + Dsui_2829 0.24 -0.3
3,006,322 + Dsui_2829 0.24 -0.0
3,006,328 + Dsui_2829 0.26 -0.1
3,006,436 + Dsui_2829 0.59 -0.4
3,006,479 + Dsui_2829 0.72 -0.3
3,006,498 + Dsui_2829 0.78 -0.1
3,006,547 + -0.1
3,006,548 + -0.1

Or see this region's nucleotide sequence