Strain Fitness in Dechlorosoma suillum PS around Dsui_2826

Experiment: rich media with hydrogen peroxide 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2825 and Dsui_2826 are separated by 33 nucleotidesDsui_2826 and Dsui_2827 are separated by 204 nucleotidesDsui_2827 and Dsui_2828 are separated by 59 nucleotides Dsui_2825: Dsui_2825 - hypothetical protein, at 3,001,095 to 3,004,202 _2825 Dsui_2826: Dsui_2826 - hypothetical protein, at 3,004,236 to 3,004,346 _2826 Dsui_2827: Dsui_2827 - hypothetical protein, at 3,004,551 to 3,005,000 _2827 Dsui_2828: Dsui_2828 - hypothetical protein, at 3,005,060 to 3,006,079 _2828 Position (kb) 3004 3005Strain fitness (log2 ratio) -2 -1 0 1at 3003.261 kb on + strand, within Dsui_2825at 3003.309 kb on - strand, within Dsui_2825at 3003.335 kb on + strand, within Dsui_2825at 3003.372 kb on + strand, within Dsui_2825at 3003.399 kb on - strand, within Dsui_2825at 3003.491 kb on + strand, within Dsui_2825at 3003.529 kb on + strand, within Dsui_2825at 3003.532 kb on - strand, within Dsui_2825at 3003.575 kb on + strand, within Dsui_2825at 3003.580 kb on + strand, within Dsui_2825at 3003.580 kb on + strand, within Dsui_2825at 3003.580 kb on + strand, within Dsui_2825at 3003.580 kb on + strand, within Dsui_2825at 3003.588 kb on - strand, within Dsui_2825at 3003.636 kb on - strandat 3003.647 kb on - strandat 3003.773 kb on - strand, within Dsui_2825at 3003.782 kb on - strand, within Dsui_2825at 3003.802 kb on - strand, within Dsui_2825at 3003.860 kb on + strand, within Dsui_2825at 3003.868 kb on - strand, within Dsui_2825at 3003.976 kb on - strandat 3004.021 kb on - strandat 3004.037 kb on + strandat 3004.040 kb on - strandat 3004.052 kb on + strandat 3004.102 kb on - strandat 3004.131 kb on + strandat 3004.200 kb on - strandat 3004.284 kb on - strand, within Dsui_2826at 3004.346 kb on + strandat 3004.354 kb on - strandat 3004.427 kb on + strandat 3004.427 kb on + strandat 3004.435 kb on - strandat 3004.504 kb on - strandat 3004.577 kb on - strandat 3004.591 kb on + strandat 3004.610 kb on + strand, within Dsui_2827at 3004.645 kb on + strand, within Dsui_2827at 3004.645 kb on + strand, within Dsui_2827at 3004.669 kb on - strand, within Dsui_2827at 3004.693 kb on + strand, within Dsui_2827at 3004.721 kb on - strand, within Dsui_2827at 3004.740 kb on - strand, within Dsui_2827at 3004.897 kb on + strand, within Dsui_2827at 3004.903 kb on + strand, within Dsui_2827at 3004.905 kb on + strand, within Dsui_2827at 3004.915 kb on - strand, within Dsui_2827at 3004.971 kb on + strandat 3005.051 kb on + strandat 3005.111 kb on + strandat 3005.129 kb on - strandat 3005.196 kb on - strand, within Dsui_2828at 3005.248 kb on - strand, within Dsui_2828at 3005.280 kb on + strand, within Dsui_2828at 3005.297 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM
remove
3,003,261 + Dsui_2825 0.70 -0.1
3,003,309 - Dsui_2825 0.71 -0.1
3,003,335 + Dsui_2825 0.72 +0.0
3,003,372 + Dsui_2825 0.73 -0.4
3,003,399 - Dsui_2825 0.74 +1.3
3,003,491 + Dsui_2825 0.77 +1.1
3,003,529 + Dsui_2825 0.78 -0.1
3,003,532 - Dsui_2825 0.78 +1.7
3,003,575 + Dsui_2825 0.80 -0.5
3,003,580 + Dsui_2825 0.80 -0.0
3,003,580 + Dsui_2825 0.80 -0.6
3,003,580 + Dsui_2825 0.80 +0.0
3,003,580 + Dsui_2825 0.80 -0.3
3,003,588 - Dsui_2825 0.80 +0.1
3,003,636 - +0.7
3,003,647 - -0.1
3,003,773 - Dsui_2825 0.86 +0.2
3,003,782 - Dsui_2825 0.86 +0.4
3,003,802 - Dsui_2825 0.87 +0.2
3,003,860 + Dsui_2825 0.89 -2.0
3,003,868 - Dsui_2825 0.89 -0.6
3,003,976 - -1.4
3,004,021 - -0.2
3,004,037 + -0.1
3,004,040 - -0.1
3,004,052 + -0.4
3,004,102 - -0.2
3,004,131 + -0.0
3,004,200 - +0.0
3,004,284 - Dsui_2826 0.43 -0.9
3,004,346 + -0.2
3,004,354 - -1.0
3,004,427 + +0.1
3,004,427 + -0.5
3,004,435 - -0.1
3,004,504 - -0.2
3,004,577 - -0.7
3,004,591 + -0.2
3,004,610 + Dsui_2827 0.13 -0.2
3,004,645 + Dsui_2827 0.21 -0.2
3,004,645 + Dsui_2827 0.21 +0.8
3,004,669 - Dsui_2827 0.26 -0.4
3,004,693 + Dsui_2827 0.32 -0.5
3,004,721 - Dsui_2827 0.38 -1.2
3,004,740 - Dsui_2827 0.42 -1.8
3,004,897 + Dsui_2827 0.77 -0.1
3,004,903 + Dsui_2827 0.78 +0.3
3,004,905 + Dsui_2827 0.79 -0.3
3,004,915 - Dsui_2827 0.81 +0.1
3,004,971 + +0.0
3,005,051 + -0.1
3,005,111 + -0.1
3,005,129 - -2.0
3,005,196 - Dsui_2828 0.13 -1.0
3,005,248 - Dsui_2828 0.18 +0.7
3,005,280 + Dsui_2828 0.22 +0.8
3,005,297 + +0.1

Or see this region's nucleotide sequence