Strain Fitness in Dechlorosoma suillum PS around Dsui_2742

Experiment: rich media with hydrogen peroxide 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2740 and Dsui_2741 are separated by 11 nucleotidesDsui_2741 and Dsui_2742 are separated by 25 nucleotidesDsui_2742 and Dsui_2743 are separated by 443 nucleotides Dsui_2740: Dsui_2740 - putative integral membrane protein, at 2,894,961 to 2,895,698 _2740 Dsui_2741: Dsui_2741 - PAS domain S-box, at 2,895,710 to 2,896,276 _2741 Dsui_2742: Dsui_2742 - molecular chaperone, at 2,896,302 to 2,897,567 _2742 Dsui_2743: Dsui_2743 - Integral membrane protein CcmA involved in cell shape determination, at 2,898,011 to 2,898,619 _2743 Position (kb) 2896 2897 2898Strain fitness (log2 ratio) -1 0 1 2at 2895.343 kb on + strandat 2895.441 kb on + strandat 2895.446 kb on + strand, within Dsui_2740at 2895.494 kb on - strandat 2895.516 kb on - strandat 2895.607 kb on + strand, within Dsui_2740at 2895.658 kb on - strandat 2895.673 kb on + strandat 2895.704 kb on + strandat 2895.712 kb on - strandat 2895.735 kb on + strandat 2895.744 kb on + strandat 2895.759 kb on + strandat 2895.784 kb on + strand, within Dsui_2741at 2895.859 kb on + strand, within Dsui_2741at 2895.864 kb on - strandat 2895.883 kb on - strand, within Dsui_2741at 2895.944 kb on + strand, within Dsui_2741at 2895.944 kb on + strand, within Dsui_2741at 2895.944 kb on + strand, within Dsui_2741at 2895.953 kb on - strand, within Dsui_2741at 2895.957 kb on - strandat 2895.957 kb on - strand, within Dsui_2741at 2896.043 kb on - strand, within Dsui_2741at 2896.220 kb on - strandat 2896.251 kb on - strandat 2896.269 kb on - strandat 2896.278 kb on - strandat 2896.329 kb on + strandat 2896.383 kb on + strandat 2896.396 kb on - strandat 2896.512 kb on - strand, within Dsui_2742at 2896.536 kb on - strand, within Dsui_2742at 2896.536 kb on - strand, within Dsui_2742at 2896.606 kb on - strand, within Dsui_2742at 2896.606 kb on - strand, within Dsui_2742at 2896.606 kb on - strand, within Dsui_2742at 2896.627 kb on + strand, within Dsui_2742at 2896.635 kb on - strand, within Dsui_2742at 2896.801 kb on - strand, within Dsui_2742at 2896.838 kb on - strand, within Dsui_2742at 2896.875 kb on + strandat 2897.131 kb on - strand, within Dsui_2742at 2897.133 kb on - strand, within Dsui_2742at 2897.187 kb on + strand, within Dsui_2742at 2897.280 kb on - strand, within Dsui_2742at 2897.297 kb on - strand, within Dsui_2742at 2897.325 kb on + strandat 2897.410 kb on - strand, within Dsui_2742at 2897.435 kb on - strand, within Dsui_2742at 2897.470 kb on - strandat 2897.521 kb on - strandat 2897.814 kb on + strandat 2897.873 kb on + strandat 2898.269 kb on - strandat 2898.446 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM
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2,895,343 + +0.9
2,895,441 + +0.9
2,895,446 + Dsui_2740 0.66 +0.2
2,895,494 - -0.1
2,895,516 - +0.9
2,895,607 + Dsui_2740 0.88 +0.0
2,895,658 - +1.9
2,895,673 + +0.6
2,895,704 + -0.3
2,895,712 - +0.2
2,895,735 + +1.3
2,895,744 + -0.6
2,895,759 + -0.3
2,895,784 + Dsui_2741 0.13 -0.1
2,895,859 + Dsui_2741 0.26 -0.4
2,895,864 - +0.9
2,895,883 - Dsui_2741 0.31 -0.2
2,895,944 + Dsui_2741 0.41 +1.3
2,895,944 + Dsui_2741 0.41 +0.7
2,895,944 + Dsui_2741 0.41 +0.5
2,895,953 - Dsui_2741 0.43 +0.2
2,895,957 - +1.5
2,895,957 - Dsui_2741 0.44 +0.3
2,896,043 - Dsui_2741 0.59 +0.4
2,896,220 - -0.1
2,896,251 - +1.7
2,896,269 - +0.7
2,896,278 - -0.0
2,896,329 + +0.6
2,896,383 + +0.7
2,896,396 - -0.2
2,896,512 - Dsui_2742 0.17 -0.2
2,896,536 - Dsui_2742 0.18 -0.5
2,896,536 - Dsui_2742 0.18 +1.1
2,896,606 - Dsui_2742 0.24 +0.5
2,896,606 - Dsui_2742 0.24 -0.2
2,896,606 - Dsui_2742 0.24 +1.1
2,896,627 + Dsui_2742 0.26 +1.0
2,896,635 - Dsui_2742 0.26 +1.0
2,896,801 - Dsui_2742 0.39 +0.5
2,896,838 - Dsui_2742 0.42 +0.4
2,896,875 + +1.4
2,897,131 - Dsui_2742 0.65 +1.9
2,897,133 - Dsui_2742 0.66 +0.4
2,897,187 + Dsui_2742 0.70 +0.2
2,897,280 - Dsui_2742 0.77 +0.0
2,897,297 - Dsui_2742 0.79 +0.5
2,897,325 + +0.6
2,897,410 - Dsui_2742 0.88 +0.0
2,897,435 - Dsui_2742 0.89 +0.2
2,897,470 - -0.4
2,897,521 - +0.5
2,897,814 + -1.2
2,897,873 + +1.9
2,898,269 - +0.9
2,898,446 + +0.3

Or see this region's nucleotide sequence