Experiment: rich media with hydrogen peroxide 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2712 and Dsui_2713 are separated by 260 nucleotides Dsui_2713 and Dsui_2714 are separated by 60 nucleotides Dsui_2714 and Dsui_2715 are separated by 14 nucleotides Dsui_2715 and Dsui_2716 are separated by 36 nucleotides Dsui_2716 and Dsui_2717 are separated by 143 nucleotides
Dsui_2712: Dsui_2712 - protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific, at 2,868,991 to 2,869,887
_2712
Dsui_2713: Dsui_2713 - membrane protease subunit, stomatin/prohibitin, at 2,870,148 to 2,871,041
_2713
Dsui_2714: Dsui_2714 - tRNA-His, at 2,871,102 to 2,871,177
_2714
Dsui_2715: Dsui_2715 - tRNA-Arg, at 2,871,192 to 2,871,268
_2715
Dsui_2716: Dsui_2716 - tRNA-Pro, at 2,871,305 to 2,871,381
_2716
Dsui_2717: Dsui_2717 - RNA polymerase-binding protein DksA, at 2,871,525 to 2,871,950
_2717
Position (kb)
2870
2871
2872 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2869.187 kb on - strand, within Dsui_2712 at 2869.190 kb on - strand, within Dsui_2712 at 2869.194 kb on + strand, within Dsui_2712 at 2869.261 kb on + strand, within Dsui_2712 at 2869.294 kb on - strand, within Dsui_2712 at 2869.466 kb on + strand, within Dsui_2712 at 2869.495 kb on - strand, within Dsui_2712 at 2869.502 kb on + strand, within Dsui_2712 at 2869.506 kb on - strand at 2869.661 kb on + strand, within Dsui_2712 at 2869.702 kb on - strand, within Dsui_2712 at 2869.702 kb on - strand, within Dsui_2712 at 2869.745 kb on - strand, within Dsui_2712 at 2869.813 kb on + strand at 2869.889 kb on + strand at 2869.891 kb on - strand at 2869.940 kb on - strand at 2870.006 kb on + strand at 2870.027 kb on - strand at 2870.117 kb on - strand at 2870.201 kb on - strand at 2870.222 kb on - strand at 2870.254 kb on + strand, within Dsui_2713 at 2870.262 kb on - strand, within Dsui_2713 at 2870.340 kb on + strand, within Dsui_2713 at 2870.357 kb on + strand, within Dsui_2713 at 2870.471 kb on - strand, within Dsui_2713 at 2870.574 kb on + strand, within Dsui_2713 at 2870.628 kb on - strand, within Dsui_2713 at 2870.656 kb on - strand, within Dsui_2713 at 2870.726 kb on + strand, within Dsui_2713 at 2870.726 kb on + strand, within Dsui_2713 at 2870.818 kb on - strand, within Dsui_2713 at 2870.878 kb on - strand, within Dsui_2713 at 2870.992 kb on + strand at 2871.000 kb on - strand at 2871.009 kb on + strand at 2871.295 kb on - strand at 2871.528 kb on + strand at 2871.585 kb on + strand, within Dsui_2717 at 2871.644 kb on + strand, within Dsui_2717 at 2871.669 kb on + strand, within Dsui_2717 at 2871.696 kb on + strand, within Dsui_2717 at 2871.742 kb on + strand, within Dsui_2717 at 2871.870 kb on + strand, within Dsui_2717
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM remove 2,869,187 - Dsui_2712 0.22 +0.1 2,869,190 - Dsui_2712 0.22 -1.0 2,869,194 + Dsui_2712 0.23 +0.3 2,869,261 + Dsui_2712 0.30 +0.1 2,869,294 - Dsui_2712 0.34 -2.3 2,869,466 + Dsui_2712 0.53 +0.0 2,869,495 - Dsui_2712 0.56 +0.5 2,869,502 + Dsui_2712 0.57 +0.6 2,869,506 - -1.0 2,869,661 + Dsui_2712 0.75 +0.4 2,869,702 - Dsui_2712 0.79 -0.5 2,869,702 - Dsui_2712 0.79 -0.3 2,869,745 - Dsui_2712 0.84 +0.3 2,869,813 + +0.1 2,869,889 + +0.5 2,869,891 - +0.0 2,869,940 - -0.3 2,870,006 + +0.7 2,870,027 - +1.7 2,870,117 - +0.4 2,870,201 - +1.0 2,870,222 - +0.3 2,870,254 + Dsui_2713 0.12 +0.3 2,870,262 - Dsui_2713 0.13 +1.9 2,870,340 + Dsui_2713 0.21 +0.6 2,870,357 + Dsui_2713 0.23 +0.7 2,870,471 - Dsui_2713 0.36 +1.5 2,870,574 + Dsui_2713 0.48 +0.2 2,870,628 - Dsui_2713 0.54 +0.3 2,870,656 - Dsui_2713 0.57 +0.8 2,870,726 + Dsui_2713 0.65 -0.3 2,870,726 + Dsui_2713 0.65 +0.3 2,870,818 - Dsui_2713 0.75 +0.2 2,870,878 - Dsui_2713 0.82 +0.1 2,870,992 + -0.0 2,871,000 - +0.5 2,871,009 + +0.3 2,871,295 - -0.6 2,871,528 + -0.3 2,871,585 + Dsui_2717 0.14 +0.4 2,871,644 + Dsui_2717 0.28 -1.8 2,871,669 + Dsui_2717 0.34 -0.3 2,871,696 + Dsui_2717 0.40 +1.0 2,871,742 + Dsui_2717 0.51 -1.1 2,871,870 + Dsui_2717 0.81 -0.9
Or see this region's nucleotide sequence