Experiment: rich media with hydrogen peroxide 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2651 and Dsui_2652 are separated by 16 nucleotides Dsui_2652 and Dsui_2653 are separated by 29 nucleotides Dsui_2653 and Dsui_2654 are separated by 16 nucleotides
Dsui_2651: Dsui_2651 - ankyrin repeat-containing protein, at 2,807,527 to 2,808,171
_2651
Dsui_2652: Dsui_2652 - hydrolase, TatD family, at 2,808,188 to 2,808,970
_2652
Dsui_2653: Dsui_2653 - Tfp pilus assembly protein PilZ, at 2,809,000 to 2,809,386
_2653
Dsui_2654: Dsui_2654 - DNA polymerase III, delta'' subunit, at 2,809,403 to 2,810,428
_2654
Position (kb)
2808
2809
2810 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2808.088 kb on - strand at 2808.088 kb on - strand, within Dsui_2651 at 2808.089 kb on - strand at 2808.152 kb on + strand at 2808.256 kb on + strand at 2808.265 kb on + strand at 2808.349 kb on + strand, within Dsui_2652 at 2808.369 kb on + strand at 2808.493 kb on + strand at 2808.513 kb on - strand, within Dsui_2652 at 2808.527 kb on + strand, within Dsui_2652 at 2808.580 kb on + strand at 2808.580 kb on + strand at 2808.617 kb on - strand, within Dsui_2652 at 2808.622 kb on - strand, within Dsui_2652 at 2808.624 kb on + strand, within Dsui_2652 at 2808.765 kb on + strand, within Dsui_2652 at 2808.773 kb on - strand, within Dsui_2652 at 2808.795 kb on - strand, within Dsui_2652 at 2808.815 kb on + strand at 2808.816 kb on + strand at 2808.835 kb on - strand, within Dsui_2652 at 2808.855 kb on - strand, within Dsui_2652 at 2808.941 kb on + strand at 2809.037 kb on - strand at 2809.063 kb on - strand, within Dsui_2653 at 2809.108 kb on + strand, within Dsui_2653 at 2809.123 kb on - strand, within Dsui_2653 at 2809.131 kb on - strand, within Dsui_2653 at 2809.188 kb on + strand at 2809.196 kb on - strand, within Dsui_2653 at 2809.390 kb on - strand at 2809.409 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM remove 2,808,088 - +1.0 2,808,088 - Dsui_2651 0.87 -0.4 2,808,089 - +2.0 2,808,152 + +2.0 2,808,256 + +1.0 2,808,265 + +0.4 2,808,349 + Dsui_2652 0.21 -1.7 2,808,369 + +0.7 2,808,493 + +0.2 2,808,513 - Dsui_2652 0.42 +0.0 2,808,527 + Dsui_2652 0.43 +0.6 2,808,580 + +3.0 2,808,580 + +1.7 2,808,617 - Dsui_2652 0.55 +1.2 2,808,622 - Dsui_2652 0.55 +0.6 2,808,624 + Dsui_2652 0.56 +0.0 2,808,765 + Dsui_2652 0.74 -1.0 2,808,773 - Dsui_2652 0.75 +1.1 2,808,795 - Dsui_2652 0.78 -0.1 2,808,815 + +1.0 2,808,816 + +1.0 2,808,835 - Dsui_2652 0.83 +0.4 2,808,855 - Dsui_2652 0.85 -1.4 2,808,941 + +1.0 2,809,037 - +0.3 2,809,063 - Dsui_2653 0.16 +0.6 2,809,108 + Dsui_2653 0.28 -1.3 2,809,123 - Dsui_2653 0.32 -0.2 2,809,131 - Dsui_2653 0.34 +0.6 2,809,188 + +2.0 2,809,196 - Dsui_2653 0.51 +0.4 2,809,390 - +0.6 2,809,409 - +0.0
Or see this region's nucleotide sequence