Experiment: rich media with hydrogen peroxide 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2615 and Dsui_2616 overlap by 10 nucleotides Dsui_2616 and Dsui_2617 are separated by 477 nucleotides Dsui_2617 and Dsui_2618 are separated by 18 nucleotides Dsui_2618 and Dsui_2619 are separated by 40 nucleotides Dsui_2619 and Dsui_2620 are separated by 4 nucleotides
Dsui_2615: Dsui_2615 - hypothetical protein, at 2,768,053 to 2,769,579
_2615
Dsui_2616: Dsui_2616 - hypothetical protein, at 2,769,570 to 2,769,788
_2616
Dsui_2617: Dsui_2617 - DNA recombination-dependent growth factor C, at 2,770,266 to 2,771,168
_2617
Dsui_2618: Dsui_2618 - putative transcriptional regulator, at 2,771,187 to 2,771,405
_2618
Dsui_2619: Dsui_2619 - hypothetical protein, at 2,771,446 to 2,771,676
_2619
Dsui_2620: Dsui_2620 - hypothetical protein, at 2,771,681 to 2,773,621
_2620
Position (kb)
2770
2771
2772 Strain fitness (log2 ratio)
-2
-1
0
1 at 2769.418 kb on + strand at 2769.428 kb on + strand at 2769.428 kb on + strand at 2769.428 kb on + strand at 2769.428 kb on + strand at 2769.428 kb on + strand at 2769.436 kb on - strand at 2769.436 kb on - strand at 2769.443 kb on + strand at 2769.473 kb on - strand at 2769.533 kb on + strand at 2769.533 kb on + strand at 2769.533 kb on + strand at 2769.541 kb on - strand at 2769.541 kb on - strand at 2769.552 kb on + strand at 2769.552 kb on + strand at 2769.652 kb on + strand, within Dsui_2616 at 2769.667 kb on + strand, within Dsui_2616 at 2769.701 kb on + strand, within Dsui_2616 at 2769.763 kb on - strand, within Dsui_2616 at 2769.796 kb on - strand at 2769.933 kb on + strand at 2769.983 kb on - strand at 2770.000 kb on - strand at 2770.116 kb on - strand at 2770.142 kb on + strand at 2770.161 kb on + strand at 2770.206 kb on + strand at 2770.260 kb on - strand at 2770.272 kb on - strand at 2770.340 kb on - strand at 2770.520 kb on + strand, within Dsui_2617 at 2771.592 kb on + strand, within Dsui_2619 at 2771.730 kb on + strand at 2771.730 kb on + strand at 2771.735 kb on + strand at 2771.790 kb on - strand at 2771.803 kb on + strand at 2771.906 kb on - strand, within Dsui_2620 at 2772.105 kb on - strand, within Dsui_2620
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM remove 2,769,418 + +1.0 2,769,428 + -0.6 2,769,428 + -0.5 2,769,428 + -1.3 2,769,428 + -1.0 2,769,428 + -0.0 2,769,436 - +0.3 2,769,436 - -0.2 2,769,443 + -1.0 2,769,473 - -0.9 2,769,533 + -0.0 2,769,533 + -0.7 2,769,533 + +1.6 2,769,541 - +0.4 2,769,541 - -0.3 2,769,552 + -1.2 2,769,552 + -0.2 2,769,652 + Dsui_2616 0.37 -0.1 2,769,667 + Dsui_2616 0.44 -0.6 2,769,701 + Dsui_2616 0.60 -1.8 2,769,763 - Dsui_2616 0.88 +0.1 2,769,796 - -1.5 2,769,933 + -0.2 2,769,983 - -1.3 2,770,000 - -0.6 2,770,116 - -1.0 2,770,142 + -0.2 2,770,161 + -0.8 2,770,206 + -2.0 2,770,260 - -0.0 2,770,272 - -0.6 2,770,340 - -0.8 2,770,520 + Dsui_2617 0.28 -0.7 2,771,592 + Dsui_2619 0.63 +1.7 2,771,730 + -0.2 2,771,730 + +1.0 2,771,735 + -0.0 2,771,790 - +0.1 2,771,803 + -0.8 2,771,906 - Dsui_2620 0.12 -1.0 2,772,105 - Dsui_2620 0.22 -1.5
Or see this region's nucleotide sequence