Experiment: rich media with hydrogen peroxide 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2608 and Dsui_2609 are separated by 9 nucleotides Dsui_2609 and Dsui_2610 are separated by 78 nucleotides Dsui_2610 and Dsui_2611 are separated by 7 nucleotides Dsui_2611 and Dsui_2612 overlap by 4 nucleotides
Dsui_2608: Dsui_2608 - topoisomerase IA, at 2,762,154 to 2,764,610
_2608
Dsui_2609: Dsui_2609 - hypothetical protein, at 2,764,620 to 2,764,883
_2609
Dsui_2610: Dsui_2610 - single-stranded DNA-binding protein, at 2,764,962 to 2,765,330
_2610
Dsui_2611: Dsui_2611 - hypothetical protein, at 2,765,338 to 2,765,667
_2611
Dsui_2612: Dsui_2612 - hypothetical protein, at 2,765,664 to 2,766,197
_2612
Position (kb)
2764
2765 Strain fitness (log2 ratio)
-1
0
1
2 at 2763.636 kb on + strand, within Dsui_2608 at 2763.644 kb on - strand, within Dsui_2608 at 2763.793 kb on - strand, within Dsui_2608 at 2763.798 kb on - strand, within Dsui_2608 at 2763.832 kb on + strand, within Dsui_2608 at 2763.913 kb on + strand, within Dsui_2608 at 2764.087 kb on - strand, within Dsui_2608 at 2764.109 kb on + strand, within Dsui_2608 at 2764.144 kb on + strand, within Dsui_2608 at 2764.158 kb on + strand, within Dsui_2608 at 2764.246 kb on - strand, within Dsui_2608 at 2764.252 kb on - strand, within Dsui_2608 at 2764.657 kb on + strand, within Dsui_2609 at 2764.727 kb on - strand, within Dsui_2609 at 2764.755 kb on - strand, within Dsui_2609 at 2764.797 kb on + strand, within Dsui_2609 at 2764.806 kb on + strand at 2764.845 kb on + strand, within Dsui_2609 at 2764.853 kb on - strand, within Dsui_2609 at 2764.853 kb on - strand, within Dsui_2609 at 2764.853 kb on - strand at 2764.994 kb on - strand at 2765.068 kb on - strand, within Dsui_2610 at 2765.125 kb on - strand, within Dsui_2610 at 2765.178 kb on - strand, within Dsui_2610 at 2765.193 kb on - strand at 2765.195 kb on + strand, within Dsui_2610 at 2765.254 kb on - strand, within Dsui_2610 at 2765.425 kb on - strand, within Dsui_2611 at 2765.425 kb on - strand, within Dsui_2611 at 2765.425 kb on - strand, within Dsui_2611 at 2765.427 kb on + strand at 2765.474 kb on - strand, within Dsui_2611 at 2765.564 kb on - strand, within Dsui_2611 at 2765.638 kb on - strand at 2765.638 kb on - strand at 2765.670 kb on + strand at 2765.736 kb on - strand, within Dsui_2612 at 2765.792 kb on - strand at 2765.792 kb on - strand, within Dsui_2612
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM remove 2,763,636 + Dsui_2608 0.60 -1.1 2,763,644 - Dsui_2608 0.61 +1.0 2,763,793 - Dsui_2608 0.67 -0.6 2,763,798 - Dsui_2608 0.67 -0.5 2,763,832 + Dsui_2608 0.68 +0.2 2,763,913 + Dsui_2608 0.72 -1.1 2,764,087 - Dsui_2608 0.79 +0.2 2,764,109 + Dsui_2608 0.80 +0.6 2,764,144 + Dsui_2608 0.81 +0.5 2,764,158 + Dsui_2608 0.82 -0.1 2,764,246 - Dsui_2608 0.85 -0.6 2,764,252 - Dsui_2608 0.85 -1.7 2,764,657 + Dsui_2609 0.14 -0.6 2,764,727 - Dsui_2609 0.41 -0.4 2,764,755 - Dsui_2609 0.51 -0.1 2,764,797 + Dsui_2609 0.67 +0.5 2,764,806 + -0.8 2,764,845 + Dsui_2609 0.85 -0.8 2,764,853 - Dsui_2609 0.88 -0.7 2,764,853 - Dsui_2609 0.88 -1.0 2,764,853 - +1.0 2,764,994 - +0.3 2,765,068 - Dsui_2610 0.29 -1.0 2,765,125 - Dsui_2610 0.44 -1.1 2,765,178 - Dsui_2610 0.59 -1.1 2,765,193 - -0.6 2,765,195 + Dsui_2610 0.63 +0.0 2,765,254 - Dsui_2610 0.79 -0.3 2,765,425 - Dsui_2611 0.26 +0.7 2,765,425 - Dsui_2611 0.26 +0.1 2,765,425 - Dsui_2611 0.26 -0.6 2,765,427 + -1.0 2,765,474 - Dsui_2611 0.41 -1.6 2,765,564 - Dsui_2611 0.68 -0.4 2,765,638 - -0.1 2,765,638 - -1.7 2,765,670 + -1.0 2,765,736 - Dsui_2612 0.13 -0.8 2,765,792 - +2.0 2,765,792 - Dsui_2612 0.24 -1.3
Or see this region's nucleotide sequence