Experiment: rich media with hydrogen peroxide 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2605 and Dsui_2606 are separated by 28 nucleotides Dsui_2606 and Dsui_2607 overlap by 4 nucleotides Dsui_2607 and Dsui_2608 are separated by 22 nucleotides Dsui_2608 and Dsui_2609 are separated by 9 nucleotides Dsui_2609 and Dsui_2610 are separated by 78 nucleotides Dsui_2610 and Dsui_2611 are separated by 7 nucleotides
Dsui_2605: Dsui_2605 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,759,672 to 2,761,408
_2605
Dsui_2606: Dsui_2606 - soluble lytic murein transglycosylase-like protein, at 2,761,437 to 2,761,913
_2606
Dsui_2607: Dsui_2607 - hypothetical protein, at 2,761,910 to 2,762,131
_2607
Dsui_2608: Dsui_2608 - topoisomerase IA, at 2,762,154 to 2,764,610
_2608
Dsui_2609: Dsui_2609 - hypothetical protein, at 2,764,620 to 2,764,883
_2609
Dsui_2610: Dsui_2610 - single-stranded DNA-binding protein, at 2,764,962 to 2,765,330
_2610
Dsui_2611: Dsui_2611 - hypothetical protein, at 2,765,338 to 2,765,667
_2611
Position (kb)
2762
2763
2764
2765 Strain fitness (log2 ratio)
-2
-1
0
1 at 2761.170 kb on - strand, within Dsui_2605 at 2761.249 kb on - strand at 2761.259 kb on - strand at 2761.513 kb on + strand, within Dsui_2606 at 2761.595 kb on - strand, within Dsui_2606 at 2761.634 kb on + strand, within Dsui_2606 at 2761.642 kb on - strand, within Dsui_2606 at 2761.891 kb on + strand at 2761.891 kb on + strand at 2762.067 kb on + strand, within Dsui_2607 at 2762.082 kb on + strand, within Dsui_2607 at 2762.140 kb on + strand at 2762.149 kb on - strand at 2762.163 kb on + strand at 2762.232 kb on + strand at 2762.298 kb on - strand at 2762.298 kb on - strand at 2762.379 kb on + strand at 2762.464 kb on + strand, within Dsui_2608 at 2762.561 kb on - strand, within Dsui_2608 at 2762.598 kb on + strand, within Dsui_2608 at 2762.606 kb on - strand, within Dsui_2608 at 2762.740 kb on + strand, within Dsui_2608 at 2762.740 kb on + strand, within Dsui_2608 at 2762.754 kb on - strand, within Dsui_2608 at 2762.766 kb on - strand, within Dsui_2608 at 2762.883 kb on + strand, within Dsui_2608 at 2762.985 kb on + strand, within Dsui_2608 at 2762.989 kb on - strand, within Dsui_2608 at 2763.178 kb on + strand at 2763.186 kb on - strand, within Dsui_2608 at 2763.351 kb on - strand, within Dsui_2608 at 2763.636 kb on + strand, within Dsui_2608 at 2763.644 kb on - strand, within Dsui_2608 at 2763.793 kb on - strand, within Dsui_2608 at 2763.798 kb on - strand, within Dsui_2608 at 2763.832 kb on + strand, within Dsui_2608 at 2763.913 kb on + strand, within Dsui_2608 at 2764.087 kb on - strand, within Dsui_2608 at 2764.109 kb on + strand, within Dsui_2608 at 2764.144 kb on + strand, within Dsui_2608 at 2764.158 kb on + strand, within Dsui_2608 at 2764.246 kb on - strand, within Dsui_2608 at 2764.252 kb on - strand, within Dsui_2608 at 2764.657 kb on + strand, within Dsui_2609 at 2764.727 kb on - strand, within Dsui_2609 at 2764.755 kb on - strand, within Dsui_2609 at 2764.797 kb on + strand, within Dsui_2609 at 2764.806 kb on + strand at 2764.845 kb on + strand, within Dsui_2609 at 2764.853 kb on - strand, within Dsui_2609 at 2764.853 kb on - strand, within Dsui_2609 at 2764.853 kb on - strand at 2764.994 kb on - strand at 2765.068 kb on - strand, within Dsui_2610 at 2765.125 kb on - strand, within Dsui_2610 at 2765.178 kb on - strand, within Dsui_2610 at 2765.193 kb on - strand at 2765.195 kb on + strand, within Dsui_2610 at 2765.254 kb on - strand, within Dsui_2610 at 2765.425 kb on - strand, within Dsui_2611 at 2765.425 kb on - strand, within Dsui_2611 at 2765.425 kb on - strand, within Dsui_2611 at 2765.427 kb on + strand at 2765.474 kb on - strand, within Dsui_2611 at 2765.564 kb on - strand, within Dsui_2611
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM remove 2,761,170 - Dsui_2605 0.86 -0.0 2,761,249 - -0.3 2,761,259 - -1.2 2,761,513 + Dsui_2606 0.16 -0.5 2,761,595 - Dsui_2606 0.33 -0.9 2,761,634 + Dsui_2606 0.41 +0.4 2,761,642 - Dsui_2606 0.43 -0.2 2,761,891 + +0.8 2,761,891 + +0.6 2,762,067 + Dsui_2607 0.71 -0.3 2,762,082 + Dsui_2607 0.77 -1.0 2,762,140 + -0.7 2,762,149 - +1.1 2,762,163 + -0.1 2,762,232 + -0.2 2,762,298 - +0.1 2,762,298 - -0.6 2,762,379 + -0.5 2,762,464 + Dsui_2608 0.13 -0.8 2,762,561 - Dsui_2608 0.17 -0.3 2,762,598 + Dsui_2608 0.18 -0.1 2,762,606 - Dsui_2608 0.18 -1.8 2,762,740 + Dsui_2608 0.24 -0.3 2,762,740 + Dsui_2608 0.24 -0.6 2,762,754 - Dsui_2608 0.24 -1.1 2,762,766 - Dsui_2608 0.25 +0.8 2,762,883 + Dsui_2608 0.30 -0.1 2,762,985 + Dsui_2608 0.34 -1.4 2,762,989 - Dsui_2608 0.34 -0.1 2,763,178 + +0.7 2,763,186 - Dsui_2608 0.42 +0.0 2,763,351 - Dsui_2608 0.49 -1.9 2,763,636 + Dsui_2608 0.60 -1.1 2,763,644 - Dsui_2608 0.61 +1.0 2,763,793 - Dsui_2608 0.67 -0.6 2,763,798 - Dsui_2608 0.67 -0.5 2,763,832 + Dsui_2608 0.68 +0.2 2,763,913 + Dsui_2608 0.72 -1.1 2,764,087 - Dsui_2608 0.79 +0.2 2,764,109 + Dsui_2608 0.80 +0.6 2,764,144 + Dsui_2608 0.81 +0.5 2,764,158 + Dsui_2608 0.82 -0.1 2,764,246 - Dsui_2608 0.85 -0.6 2,764,252 - Dsui_2608 0.85 -1.7 2,764,657 + Dsui_2609 0.14 -0.6 2,764,727 - Dsui_2609 0.41 -0.4 2,764,755 - Dsui_2609 0.51 -0.1 2,764,797 + Dsui_2609 0.67 +0.5 2,764,806 + -0.8 2,764,845 + Dsui_2609 0.85 -0.8 2,764,853 - Dsui_2609 0.88 -0.7 2,764,853 - Dsui_2609 0.88 -1.0 2,764,853 - +1.0 2,764,994 - +0.3 2,765,068 - Dsui_2610 0.29 -1.0 2,765,125 - Dsui_2610 0.44 -1.1 2,765,178 - Dsui_2610 0.59 -1.1 2,765,193 - -0.6 2,765,195 + Dsui_2610 0.63 +0.0 2,765,254 - Dsui_2610 0.79 -0.3 2,765,425 - Dsui_2611 0.26 +0.7 2,765,425 - Dsui_2611 0.26 +0.1 2,765,425 - Dsui_2611 0.26 -0.6 2,765,427 + -1.0 2,765,474 - Dsui_2611 0.41 -1.6 2,765,564 - Dsui_2611 0.68 -0.4
Or see this region's nucleotide sequence