Experiment: rich media with hydrogen peroxide 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2603 and Dsui_2604 are separated by 358 nucleotides Dsui_2604 and Dsui_2605 are separated by 28 nucleotides Dsui_2605 and Dsui_2606 are separated by 28 nucleotides Dsui_2606 and Dsui_2607 overlap by 4 nucleotides Dsui_2607 and Dsui_2608 are separated by 22 nucleotides
Dsui_2603: Dsui_2603 - hypothetical protein, at 2,758,719 to 2,759,090
_2603
Dsui_2604: Dsui_2604 - hypothetical protein, at 2,759,449 to 2,759,643
_2604
Dsui_2605: Dsui_2605 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,759,672 to 2,761,408
_2605
Dsui_2606: Dsui_2606 - soluble lytic murein transglycosylase-like protein, at 2,761,437 to 2,761,913
_2606
Dsui_2607: Dsui_2607 - hypothetical protein, at 2,761,910 to 2,762,131
_2607
Dsui_2608: Dsui_2608 - topoisomerase IA, at 2,762,154 to 2,764,610
_2608
Position (kb)
2759
2760
2761
2762 Strain fitness (log2 ratio)
-2
-1
0
1 at 2758.674 kb on + strand at 2758.796 kb on + strand, within Dsui_2603 at 2758.817 kb on + strand at 2758.825 kb on - strand, within Dsui_2603 at 2758.876 kb on + strand, within Dsui_2603 at 2758.884 kb on - strand, within Dsui_2603 at 2758.930 kb on + strand, within Dsui_2603 at 2758.930 kb on + strand, within Dsui_2603 at 2758.938 kb on - strand, within Dsui_2603 at 2758.938 kb on - strand, within Dsui_2603 at 2758.938 kb on - strand, within Dsui_2603 at 2758.938 kb on - strand, within Dsui_2603 at 2758.938 kb on - strand, within Dsui_2603 at 2758.957 kb on + strand, within Dsui_2603 at 2758.957 kb on + strand, within Dsui_2603 at 2758.958 kb on + strand at 2758.985 kb on + strand, within Dsui_2603 at 2759.054 kb on - strand at 2759.079 kb on - strand at 2759.133 kb on - strand at 2759.222 kb on - strand at 2759.239 kb on - strand at 2759.239 kb on - strand at 2759.239 kb on - strand at 2759.368 kb on - strand at 2759.368 kb on - strand at 2759.453 kb on - strand at 2759.453 kb on - strand at 2759.482 kb on + strand at 2759.524 kb on - strand, within Dsui_2604 at 2759.544 kb on - strand, within Dsui_2604 at 2759.603 kb on - strand, within Dsui_2604 at 2759.603 kb on - strand, within Dsui_2604 at 2759.603 kb on - strand, within Dsui_2604 at 2759.613 kb on - strand, within Dsui_2604 at 2759.620 kb on - strand, within Dsui_2604 at 2759.622 kb on - strand, within Dsui_2604 at 2759.742 kb on - strand at 2759.778 kb on - strand at 2759.839 kb on + strand at 2759.839 kb on + strand at 2759.839 kb on + strand at 2759.847 kb on - strand, within Dsui_2605 at 2759.847 kb on - strand, within Dsui_2605 at 2759.847 kb on - strand, within Dsui_2605 at 2759.847 kb on - strand, within Dsui_2605 at 2759.847 kb on - strand, within Dsui_2605 at 2760.047 kb on + strand, within Dsui_2605 at 2760.101 kb on - strand, within Dsui_2605 at 2760.306 kb on + strand, within Dsui_2605 at 2760.384 kb on - strand, within Dsui_2605 at 2760.396 kb on - strand, within Dsui_2605 at 2760.407 kb on + strand, within Dsui_2605 at 2760.516 kb on + strand, within Dsui_2605 at 2760.550 kb on - strand, within Dsui_2605 at 2760.698 kb on + strand, within Dsui_2605 at 2760.712 kb on + strand, within Dsui_2605 at 2760.877 kb on + strand, within Dsui_2605 at 2760.890 kb on - strand, within Dsui_2605 at 2760.902 kb on + strand, within Dsui_2605 at 2761.005 kb on - strand, within Dsui_2605 at 2761.063 kb on + strand, within Dsui_2605 at 2761.094 kb on + strand, within Dsui_2605 at 2761.170 kb on - strand, within Dsui_2605 at 2761.249 kb on - strand at 2761.259 kb on - strand at 2761.513 kb on + strand, within Dsui_2606 at 2761.595 kb on - strand, within Dsui_2606 at 2761.634 kb on + strand, within Dsui_2606 at 2761.642 kb on - strand, within Dsui_2606 at 2761.891 kb on + strand at 2761.891 kb on + strand at 2762.067 kb on + strand, within Dsui_2607 at 2762.082 kb on + strand, within Dsui_2607 at 2762.140 kb on + strand at 2762.149 kb on - strand at 2762.163 kb on + strand at 2762.232 kb on + strand at 2762.298 kb on - strand at 2762.298 kb on - strand at 2762.379 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM remove 2,758,674 + -0.3 2,758,796 + Dsui_2603 0.21 -0.2 2,758,817 + +1.0 2,758,825 - Dsui_2603 0.28 +0.0 2,758,876 + Dsui_2603 0.42 -1.8 2,758,884 - Dsui_2603 0.44 -0.3 2,758,930 + Dsui_2603 0.57 +0.2 2,758,930 + Dsui_2603 0.57 -0.6 2,758,938 - Dsui_2603 0.59 -0.2 2,758,938 - Dsui_2603 0.59 -0.7 2,758,938 - Dsui_2603 0.59 -0.1 2,758,938 - Dsui_2603 0.59 -0.1 2,758,938 - Dsui_2603 0.59 -1.2 2,758,957 + Dsui_2603 0.64 -0.2 2,758,957 + Dsui_2603 0.64 -0.6 2,758,958 + +0.4 2,758,985 + Dsui_2603 0.72 -1.3 2,759,054 - -1.4 2,759,079 - +1.1 2,759,133 - -0.3 2,759,222 - +0.0 2,759,239 - +0.3 2,759,239 - -0.9 2,759,239 - -1.0 2,759,368 - -0.2 2,759,368 - +1.5 2,759,453 - -0.3 2,759,453 - +0.4 2,759,482 + -0.3 2,759,524 - Dsui_2604 0.38 +0.7 2,759,544 - Dsui_2604 0.49 -0.9 2,759,603 - Dsui_2604 0.79 -0.4 2,759,603 - Dsui_2604 0.79 -0.4 2,759,603 - Dsui_2604 0.79 -1.1 2,759,613 - Dsui_2604 0.84 -0.3 2,759,620 - Dsui_2604 0.88 +0.3 2,759,622 - Dsui_2604 0.89 -1.8 2,759,742 - +0.1 2,759,778 - +0.1 2,759,839 + -1.2 2,759,839 + +0.3 2,759,839 + -0.8 2,759,847 - Dsui_2605 0.10 -0.1 2,759,847 - Dsui_2605 0.10 -1.4 2,759,847 - Dsui_2605 0.10 -0.1 2,759,847 - Dsui_2605 0.10 +0.3 2,759,847 - Dsui_2605 0.10 -0.2 2,760,047 + Dsui_2605 0.22 -0.3 2,760,101 - Dsui_2605 0.25 -0.6 2,760,306 + Dsui_2605 0.36 -0.5 2,760,384 - Dsui_2605 0.41 -2.0 2,760,396 - Dsui_2605 0.42 -0.6 2,760,407 + Dsui_2605 0.42 -0.1 2,760,516 + Dsui_2605 0.49 +0.4 2,760,550 - Dsui_2605 0.51 -0.9 2,760,698 + Dsui_2605 0.59 +0.8 2,760,712 + Dsui_2605 0.60 +0.1 2,760,877 + Dsui_2605 0.69 -0.1 2,760,890 - Dsui_2605 0.70 -1.8 2,760,902 + Dsui_2605 0.71 -0.8 2,761,005 - Dsui_2605 0.77 -0.6 2,761,063 + Dsui_2605 0.80 -0.7 2,761,094 + Dsui_2605 0.82 -1.2 2,761,170 - Dsui_2605 0.86 -0.0 2,761,249 - -0.3 2,761,259 - -1.2 2,761,513 + Dsui_2606 0.16 -0.5 2,761,595 - Dsui_2606 0.33 -0.9 2,761,634 + Dsui_2606 0.41 +0.4 2,761,642 - Dsui_2606 0.43 -0.2 2,761,891 + +0.8 2,761,891 + +0.6 2,762,067 + Dsui_2607 0.71 -0.3 2,762,082 + Dsui_2607 0.77 -1.0 2,762,140 + -0.7 2,762,149 - +1.1 2,762,163 + -0.1 2,762,232 + -0.2 2,762,298 - +0.1 2,762,298 - -0.6 2,762,379 + -0.5
Or see this region's nucleotide sequence