Experiment: rich media with hydrogen peroxide 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2592 and Dsui_2593 are separated by 27 nucleotides Dsui_2593 and Dsui_2594 are separated by 12 nucleotides Dsui_2594 and Dsui_2595 are separated by 16 nucleotides
Dsui_2592: Dsui_2592 - type II secretory pathway, component PulF, at 2,747,608 to 2,748,720
_2592
Dsui_2593: Dsui_2593 - PilS N terminal protein, at 2,748,748 to 2,749,287
_2593
Dsui_2594: Dsui_2594 - type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB, at 2,749,300 to 2,750,256
_2594
Dsui_2595: Dsui_2595 - type II secretory pathway, pseudopilin PulG, at 2,750,273 to 2,751,646
_2595
Position (kb)
2749
2750
2751 Strain fitness (log2 ratio)
-2
-1
0
1 at 2748.314 kb on - strand, within Dsui_2592 at 2748.314 kb on - strand, within Dsui_2592 at 2748.324 kb on - strand, within Dsui_2592 at 2748.334 kb on + strand, within Dsui_2592 at 2748.357 kb on + strand, within Dsui_2592 at 2748.373 kb on - strand, within Dsui_2592 at 2748.487 kb on - strand, within Dsui_2592 at 2748.638 kb on - strand at 2748.658 kb on - strand at 2748.669 kb on - strand at 2748.678 kb on + strand at 2748.683 kb on + strand at 2748.720 kb on + strand at 2748.818 kb on - strand, within Dsui_2593 at 2748.820 kb on - strand, within Dsui_2593 at 2748.834 kb on + strand, within Dsui_2593 at 2748.842 kb on - strand, within Dsui_2593 at 2748.882 kb on + strand, within Dsui_2593 at 2748.890 kb on - strand, within Dsui_2593 at 2748.890 kb on - strand, within Dsui_2593 at 2748.890 kb on - strand, within Dsui_2593 at 2748.895 kb on - strand, within Dsui_2593 at 2749.105 kb on + strand, within Dsui_2593 at 2749.126 kb on + strand, within Dsui_2593 at 2749.199 kb on - strand at 2749.210 kb on + strand, within Dsui_2593 at 2749.210 kb on + strand, within Dsui_2593 at 2749.218 kb on - strand, within Dsui_2593 at 2749.235 kb on - strand at 2749.309 kb on + strand at 2749.392 kb on + strand at 2749.400 kb on - strand, within Dsui_2594 at 2749.580 kb on + strand, within Dsui_2594 at 2749.704 kb on + strand, within Dsui_2594 at 2749.732 kb on - strand, within Dsui_2594 at 2749.742 kb on + strand, within Dsui_2594 at 2749.742 kb on + strand, within Dsui_2594 at 2749.742 kb on + strand, within Dsui_2594 at 2749.747 kb on + strand, within Dsui_2594 at 2749.747 kb on + strand, within Dsui_2594 at 2749.748 kb on + strand, within Dsui_2594 at 2749.750 kb on - strand, within Dsui_2594 at 2749.755 kb on - strand, within Dsui_2594 at 2749.800 kb on - strand, within Dsui_2594 at 2749.938 kb on + strand, within Dsui_2594 at 2750.347 kb on + strand at 2750.356 kb on - strand at 2750.387 kb on + strand at 2750.435 kb on + strand, within Dsui_2595 at 2750.474 kb on - strand, within Dsui_2595 at 2750.497 kb on + strand, within Dsui_2595 at 2750.540 kb on + strand, within Dsui_2595 at 2750.545 kb on - strand at 2750.573 kb on + strand, within Dsui_2595 at 2750.652 kb on + strand, within Dsui_2595 at 2750.660 kb on - strand, within Dsui_2595 at 2750.662 kb on + strand, within Dsui_2595 at 2750.662 kb on + strand, within Dsui_2595 at 2750.670 kb on - strand at 2750.772 kb on - strand, within Dsui_2595 at 2750.885 kb on - strand, within Dsui_2595 at 2750.887 kb on + strand, within Dsui_2595 at 2750.900 kb on - strand, within Dsui_2595 at 2751.001 kb on + strand, within Dsui_2595 at 2751.144 kb on - strand, within Dsui_2595 at 2751.171 kb on + strand, within Dsui_2595 at 2751.179 kb on - strand, within Dsui_2595 at 2751.205 kb on - strand, within Dsui_2595
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM remove 2,748,314 - Dsui_2592 0.63 -1.2 2,748,314 - Dsui_2592 0.63 -0.3 2,748,324 - Dsui_2592 0.64 -0.1 2,748,334 + Dsui_2592 0.65 -0.9 2,748,357 + Dsui_2592 0.67 -0.7 2,748,373 - Dsui_2592 0.69 -0.3 2,748,487 - Dsui_2592 0.79 +1.4 2,748,638 - +0.5 2,748,658 - -0.1 2,748,669 - -0.2 2,748,678 + +0.4 2,748,683 + +0.4 2,748,720 + -0.6 2,748,818 - Dsui_2593 0.13 -1.1 2,748,820 - Dsui_2593 0.13 -0.4 2,748,834 + Dsui_2593 0.16 +0.0 2,748,842 - Dsui_2593 0.17 -0.3 2,748,882 + Dsui_2593 0.25 +0.4 2,748,890 - Dsui_2593 0.26 +0.6 2,748,890 - Dsui_2593 0.26 -0.5 2,748,890 - Dsui_2593 0.26 -1.8 2,748,895 - Dsui_2593 0.27 -0.6 2,749,105 + Dsui_2593 0.66 +0.3 2,749,126 + Dsui_2593 0.70 -1.2 2,749,199 - -1.0 2,749,210 + Dsui_2593 0.86 +0.4 2,749,210 + Dsui_2593 0.86 -0.5 2,749,218 - Dsui_2593 0.87 -0.4 2,749,235 - -0.6 2,749,309 + -0.6 2,749,392 + -1.1 2,749,400 - Dsui_2594 0.10 +0.0 2,749,580 + Dsui_2594 0.29 -0.4 2,749,704 + Dsui_2594 0.42 -0.8 2,749,732 - Dsui_2594 0.45 -1.3 2,749,742 + Dsui_2594 0.46 +0.5 2,749,742 + Dsui_2594 0.46 -0.4 2,749,742 + Dsui_2594 0.46 -0.1 2,749,747 + Dsui_2594 0.47 -0.8 2,749,747 + Dsui_2594 0.47 -0.9 2,749,748 + Dsui_2594 0.47 -1.0 2,749,750 - Dsui_2594 0.47 -0.8 2,749,755 - Dsui_2594 0.48 -0.2 2,749,800 - Dsui_2594 0.52 -0.6 2,749,938 + Dsui_2594 0.67 -0.5 2,750,347 + +0.0 2,750,356 - +0.3 2,750,387 + -1.0 2,750,435 + Dsui_2595 0.12 -0.6 2,750,474 - Dsui_2595 0.15 -0.1 2,750,497 + Dsui_2595 0.16 -0.5 2,750,540 + Dsui_2595 0.19 +0.8 2,750,545 - -0.8 2,750,573 + Dsui_2595 0.22 +0.3 2,750,652 + Dsui_2595 0.28 -0.1 2,750,660 - Dsui_2595 0.28 -0.3 2,750,662 + Dsui_2595 0.28 -0.4 2,750,662 + Dsui_2595 0.28 -0.7 2,750,670 - +0.2 2,750,772 - Dsui_2595 0.36 +0.1 2,750,885 - Dsui_2595 0.45 -0.5 2,750,887 + Dsui_2595 0.45 -0.5 2,750,900 - Dsui_2595 0.46 +1.2 2,751,001 + Dsui_2595 0.53 +0.1 2,751,144 - Dsui_2595 0.63 -0.2 2,751,171 + Dsui_2595 0.65 -0.3 2,751,179 - Dsui_2595 0.66 -0.3 2,751,205 - Dsui_2595 0.68 +0.0
Or see this region's nucleotide sequence