Experiment: rich media with hydrogen peroxide 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2587 and Dsui_2588 are separated by 22 nucleotides Dsui_2588 and Dsui_2589 are separated by 10 nucleotides Dsui_2589 and Dsui_2590 are separated by 2 nucleotides
Dsui_2587: Dsui_2587 - type IV secretory pathway, VirB10 component, at 2,740,060 to 2,741,385
_2587
Dsui_2588: Dsui_2588 - type IV secretory pathway, VirB9 component, at 2,741,408 to 2,742,262
_2588
Dsui_2589: Dsui_2589 - type II secretory pathway, component PulD, at 2,742,273 to 2,743,994
_2589
Dsui_2590: Dsui_2590 - Pilin accessory protein (PilO), at 2,743,997 to 2,745,409
_2590
Position (kb)
2742
2743
2744 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2741.300 kb on + strand at 2741.308 kb on - strand at 2741.310 kb on + strand at 2741.318 kb on - strand at 2741.380 kb on + strand at 2741.931 kb on - strand, within Dsui_2588 at 2742.097 kb on + strand, within Dsui_2588 at 2742.240 kb on - strand at 2742.545 kb on + strand, within Dsui_2589 at 2742.580 kb on - strand, within Dsui_2589 at 2743.312 kb on - strand at 2743.472 kb on + strand, within Dsui_2589 at 2743.552 kb on + strand, within Dsui_2589 at 2743.560 kb on - strand, within Dsui_2589 at 2743.641 kb on - strand, within Dsui_2589 at 2743.652 kb on - strand, within Dsui_2589 at 2743.654 kb on + strand, within Dsui_2589 at 2743.662 kb on - strand, within Dsui_2589 at 2743.666 kb on + strand, within Dsui_2589 at 2743.676 kb on + strand, within Dsui_2589 at 2743.678 kb on + strand, within Dsui_2589 at 2743.678 kb on + strand, within Dsui_2589 at 2743.679 kb on - strand, within Dsui_2589 at 2743.768 kb on + strand, within Dsui_2589 at 2743.768 kb on + strand, within Dsui_2589 at 2744.026 kb on - strand at 2744.408 kb on + strand, within Dsui_2590 at 2744.497 kb on - strand, within Dsui_2590 at 2744.571 kb on - strand, within Dsui_2590 at 2744.573 kb on + strand, within Dsui_2590 at 2744.676 kb on - strand, within Dsui_2590 at 2744.732 kb on + strand, within Dsui_2590 at 2744.735 kb on + strand at 2744.752 kb on + strand, within Dsui_2590 at 2744.762 kb on - strand, within Dsui_2590 at 2744.855 kb on + strand, within Dsui_2590 at 2744.932 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM remove 2,741,300 + -0.1 2,741,308 - -0.2 2,741,310 + -0.8 2,741,318 - -1.2 2,741,380 + -1.6 2,741,931 - Dsui_2588 0.61 -0.9 2,742,097 + Dsui_2588 0.81 -0.3 2,742,240 - -2.4 2,742,545 + Dsui_2589 0.16 -0.4 2,742,580 - Dsui_2589 0.18 +0.3 2,743,312 - +0.4 2,743,472 + Dsui_2589 0.70 +0.1 2,743,552 + Dsui_2589 0.74 +0.4 2,743,560 - Dsui_2589 0.75 -0.3 2,743,641 - Dsui_2589 0.79 -0.2 2,743,652 - Dsui_2589 0.80 -0.5 2,743,654 + Dsui_2589 0.80 -1.5 2,743,662 - Dsui_2589 0.81 -2.2 2,743,666 + Dsui_2589 0.81 -0.6 2,743,676 + Dsui_2589 0.81 +0.1 2,743,678 + Dsui_2589 0.82 -1.8 2,743,678 + Dsui_2589 0.82 -1.2 2,743,679 - Dsui_2589 0.82 +0.0 2,743,768 + Dsui_2589 0.87 -0.7 2,743,768 + Dsui_2589 0.87 -0.5 2,744,026 - +0.0 2,744,408 + Dsui_2590 0.29 -0.3 2,744,497 - Dsui_2590 0.35 +1.0 2,744,571 - Dsui_2590 0.41 -0.2 2,744,573 + Dsui_2590 0.41 -0.4 2,744,676 - Dsui_2590 0.48 -0.6 2,744,732 + Dsui_2590 0.52 +0.3 2,744,735 + +1.3 2,744,752 + Dsui_2590 0.53 -1.3 2,744,762 - Dsui_2590 0.54 +1.1 2,744,855 + Dsui_2590 0.61 -0.9 2,744,932 + +2.6
Or see this region's nucleotide sequence