Experiment: rich media with hydrogen peroxide 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2577 and Dsui_2578 are separated by 349 nucleotides Dsui_2578 and Dsui_2579 are separated by 14 nucleotides
Dsui_2577: Dsui_2577 - type IV secretory pathway, VirB4 component, at 2,726,787 to 2,729,378
_2577
Dsui_2578: Dsui_2578 - hypothetical protein, at 2,729,728 to 2,730,057
_2578
Dsui_2579: Dsui_2579 - Flp pilus assembly protein, ATPase CpaF, at 2,730,072 to 2,731,124
_2579
Position (kb)
2729
2730
2731 Strain fitness (log2 ratio)
-2
-1
0
1 at 2728.898 kb on - strand at 2728.909 kb on + strand, within Dsui_2577 at 2728.944 kb on + strand, within Dsui_2577 at 2728.963 kb on + strand, within Dsui_2577 at 2728.963 kb on + strand, within Dsui_2577 at 2728.963 kb on + strand, within Dsui_2577 at 2728.966 kb on - strand, within Dsui_2577 at 2729.093 kb on + strand, within Dsui_2577 at 2729.219 kb on + strand at 2729.317 kb on - strand at 2729.349 kb on + strand at 2729.408 kb on + strand at 2729.538 kb on + strand at 2729.546 kb on - strand at 2729.553 kb on - strand at 2729.556 kb on - strand at 2729.614 kb on + strand at 2729.651 kb on - strand at 2729.697 kb on + strand at 2729.735 kb on + strand at 2729.735 kb on + strand at 2729.743 kb on - strand at 2729.819 kb on + strand, within Dsui_2578 at 2729.827 kb on - strand, within Dsui_2578 at 2729.827 kb on - strand, within Dsui_2578 at 2729.827 kb on - strand, within Dsui_2578 at 2729.894 kb on + strand, within Dsui_2578 at 2730.146 kb on + strand at 2730.170 kb on - strand at 2730.172 kb on - strand at 2730.256 kb on + strand, within Dsui_2579 at 2730.299 kb on - strand, within Dsui_2579 at 2730.428 kb on + strand, within Dsui_2579 at 2730.475 kb on + strand, within Dsui_2579 at 2730.542 kb on + strand, within Dsui_2579 at 2730.563 kb on + strand, within Dsui_2579 at 2730.577 kb on - strand, within Dsui_2579 at 2730.647 kb on + strand, within Dsui_2579 at 2730.737 kb on + strand, within Dsui_2579 at 2730.777 kb on + strand, within Dsui_2579 at 2730.777 kb on + strand, within Dsui_2579 at 2730.782 kb on + strand, within Dsui_2579 at 2730.817 kb on + strand, within Dsui_2579 at 2730.817 kb on + strand, within Dsui_2579 at 2730.819 kb on + strand, within Dsui_2579 at 2730.844 kb on + strand, within Dsui_2579 at 2730.863 kb on + strand, within Dsui_2579 at 2730.904 kb on + strand, within Dsui_2579 at 2730.930 kb on + strand, within Dsui_2579 at 2730.940 kb on + strand, within Dsui_2579 at 2730.948 kb on - strand, within Dsui_2579 at 2731.032 kb on + strand at 2731.032 kb on + strand at 2731.032 kb on + strand at 2731.040 kb on - strand at 2731.040 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM remove 2,728,898 - -1.0 2,728,909 + Dsui_2577 0.82 +0.7 2,728,944 + Dsui_2577 0.83 -1.3 2,728,963 + Dsui_2577 0.84 -0.5 2,728,963 + Dsui_2577 0.84 -1.7 2,728,963 + Dsui_2577 0.84 -0.9 2,728,966 - Dsui_2577 0.84 +1.2 2,729,093 + Dsui_2577 0.89 -0.2 2,729,219 + -0.4 2,729,317 - -1.9 2,729,349 + -0.7 2,729,408 + +0.1 2,729,538 + -0.5 2,729,546 - +0.1 2,729,553 - -0.3 2,729,556 - +0.5 2,729,614 + -2.1 2,729,651 - -1.0 2,729,697 + +1.0 2,729,735 + -1.3 2,729,735 + +0.1 2,729,743 - +1.2 2,729,819 + Dsui_2578 0.28 -0.8 2,729,827 - Dsui_2578 0.30 -1.1 2,729,827 - Dsui_2578 0.30 -0.4 2,729,827 - Dsui_2578 0.30 -0.2 2,729,894 + Dsui_2578 0.50 +1.4 2,730,146 + -0.3 2,730,170 - +1.2 2,730,172 - +0.8 2,730,256 + Dsui_2579 0.17 -0.3 2,730,299 - Dsui_2579 0.22 -0.4 2,730,428 + Dsui_2579 0.34 +0.8 2,730,475 + Dsui_2579 0.38 +0.2 2,730,542 + Dsui_2579 0.45 -0.6 2,730,563 + Dsui_2579 0.47 -0.4 2,730,577 - Dsui_2579 0.48 +0.4 2,730,647 + Dsui_2579 0.55 -0.4 2,730,737 + Dsui_2579 0.63 -0.7 2,730,777 + Dsui_2579 0.67 -2.2 2,730,777 + Dsui_2579 0.67 -1.3 2,730,782 + Dsui_2579 0.67 -0.6 2,730,817 + Dsui_2579 0.71 -1.1 2,730,817 + Dsui_2579 0.71 +0.0 2,730,819 + Dsui_2579 0.71 -0.1 2,730,844 + Dsui_2579 0.73 -0.8 2,730,863 + Dsui_2579 0.75 -0.4 2,730,904 + Dsui_2579 0.79 -0.8 2,730,930 + Dsui_2579 0.81 +0.4 2,730,940 + Dsui_2579 0.82 -0.7 2,730,948 - Dsui_2579 0.83 -0.3 2,731,032 + -0.4 2,731,032 + -0.4 2,731,032 + -0.3 2,731,040 - -0.3 2,731,040 - -1.5
Or see this region's nucleotide sequence