Strain Fitness in Dechlorosoma suillum PS around Dsui_2577

Experiment: rich media with hydrogen peroxide 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2575 and Dsui_2576 are separated by 13 nucleotidesDsui_2576 and Dsui_2577 overlap by 4 nucleotidesDsui_2577 and Dsui_2578 are separated by 349 nucleotidesDsui_2578 and Dsui_2579 are separated by 14 nucleotides Dsui_2575: Dsui_2575 - hypothetical protein, at 2,725,416 to 2,726,186 _2575 Dsui_2576: Dsui_2576 - hypothetical protein, at 2,726,200 to 2,726,790 _2576 Dsui_2577: Dsui_2577 - type IV secretory pathway, VirB4 component, at 2,726,787 to 2,729,378 _2577 Dsui_2578: Dsui_2578 - hypothetical protein, at 2,729,728 to 2,730,057 _2578 Dsui_2579: Dsui_2579 - Flp pilus assembly protein, ATPase CpaF, at 2,730,072 to 2,731,124 _2579 Position (kb) 2726 2727 2728 2729 2730Strain fitness (log2 ratio) -2 -1 0 1 2at 2725.805 kb on - strand, within Dsui_2575at 2725.825 kb on + strand, within Dsui_2575at 2725.869 kb on + strand, within Dsui_2575at 2725.875 kb on - strand, within Dsui_2575at 2725.905 kb on - strand, within Dsui_2575at 2725.922 kb on - strand, within Dsui_2575at 2726.195 kb on + strandat 2726.201 kb on + strandat 2726.254 kb on - strandat 2726.319 kb on - strand, within Dsui_2576at 2726.390 kb on + strandat 2726.415 kb on - strand, within Dsui_2576at 2726.416 kb on - strand, within Dsui_2576at 2726.416 kb on - strand, within Dsui_2576at 2726.439 kb on - strand, within Dsui_2576at 2726.460 kb on + strand, within Dsui_2576at 2726.598 kb on + strand, within Dsui_2576at 2726.611 kb on - strand, within Dsui_2576at 2726.658 kb on - strand, within Dsui_2576at 2726.693 kb on - strand, within Dsui_2576at 2726.700 kb on + strand, within Dsui_2576at 2726.722 kb on + strand, within Dsui_2576at 2726.883 kb on + strandat 2726.900 kb on + strandat 2726.986 kb on + strandat 2727.054 kb on - strand, within Dsui_2577at 2727.054 kb on - strand, within Dsui_2577at 2727.178 kb on + strand, within Dsui_2577at 2727.208 kb on - strand, within Dsui_2577at 2727.272 kb on - strand, within Dsui_2577at 2727.472 kb on + strand, within Dsui_2577at 2727.502 kb on + strand, within Dsui_2577at 2727.556 kb on + strand, within Dsui_2577at 2727.564 kb on - strand, within Dsui_2577at 2727.587 kb on + strand, within Dsui_2577at 2727.587 kb on + strand, within Dsui_2577at 2727.587 kb on + strand, within Dsui_2577at 2727.587 kb on + strand, within Dsui_2577at 2727.595 kb on - strand, within Dsui_2577at 2727.674 kb on + strand, within Dsui_2577at 2727.674 kb on + strand, within Dsui_2577at 2727.674 kb on + strand, within Dsui_2577at 2727.679 kb on + strand, within Dsui_2577at 2727.708 kb on + strand, within Dsui_2577at 2727.827 kb on - strand, within Dsui_2577at 2727.867 kb on + strand, within Dsui_2577at 2727.875 kb on - strandat 2727.890 kb on - strand, within Dsui_2577at 2727.909 kb on + strand, within Dsui_2577at 2727.924 kb on - strand, within Dsui_2577at 2727.939 kb on - strand, within Dsui_2577at 2727.987 kb on + strand, within Dsui_2577at 2727.988 kb on - strand, within Dsui_2577at 2727.995 kb on - strand, within Dsui_2577at 2728.003 kb on + strand, within Dsui_2577at 2728.169 kb on + strand, within Dsui_2577at 2728.169 kb on + strand, within Dsui_2577at 2728.295 kb on + strand, within Dsui_2577at 2728.298 kb on + strand, within Dsui_2577at 2728.393 kb on + strand, within Dsui_2577at 2728.430 kb on - strand, within Dsui_2577at 2728.487 kb on + strand, within Dsui_2577at 2728.495 kb on - strand, within Dsui_2577at 2728.509 kb on - strand, within Dsui_2577at 2728.597 kb on + strand, within Dsui_2577at 2728.618 kb on - strand, within Dsui_2577at 2728.647 kb on + strand, within Dsui_2577at 2728.694 kb on + strand, within Dsui_2577at 2728.898 kb on - strandat 2728.909 kb on + strand, within Dsui_2577at 2728.944 kb on + strand, within Dsui_2577at 2728.963 kb on + strand, within Dsui_2577at 2728.963 kb on + strand, within Dsui_2577at 2728.963 kb on + strand, within Dsui_2577at 2728.966 kb on - strand, within Dsui_2577at 2729.093 kb on + strand, within Dsui_2577at 2729.219 kb on + strandat 2729.317 kb on - strandat 2729.349 kb on + strandat 2729.408 kb on + strandat 2729.538 kb on + strandat 2729.546 kb on - strandat 2729.553 kb on - strandat 2729.556 kb on - strandat 2729.614 kb on + strandat 2729.651 kb on - strandat 2729.697 kb on + strandat 2729.735 kb on + strandat 2729.735 kb on + strandat 2729.743 kb on - strandat 2729.819 kb on + strand, within Dsui_2578at 2729.827 kb on - strand, within Dsui_2578at 2729.827 kb on - strand, within Dsui_2578at 2729.827 kb on - strand, within Dsui_2578at 2729.894 kb on + strand, within Dsui_2578at 2730.146 kb on + strandat 2730.170 kb on - strandat 2730.172 kb on - strandat 2730.256 kb on + strand, within Dsui_2579at 2730.299 kb on - strand, within Dsui_2579

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM
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2,725,805 - Dsui_2575 0.50 -0.4
2,725,825 + Dsui_2575 0.53 +0.6
2,725,869 + Dsui_2575 0.59 -0.0
2,725,875 - Dsui_2575 0.60 +0.1
2,725,905 - Dsui_2575 0.63 -0.2
2,725,922 - Dsui_2575 0.66 -0.6
2,726,195 + +0.0
2,726,201 + +0.2
2,726,254 - +1.0
2,726,319 - Dsui_2576 0.20 +0.4
2,726,390 + +1.3
2,726,415 - Dsui_2576 0.36 -1.7
2,726,416 - Dsui_2576 0.37 -0.3
2,726,416 - Dsui_2576 0.37 -0.6
2,726,439 - Dsui_2576 0.40 +0.2
2,726,460 + Dsui_2576 0.44 -0.4
2,726,598 + Dsui_2576 0.67 +0.2
2,726,611 - Dsui_2576 0.70 -0.6
2,726,658 - Dsui_2576 0.77 -0.3
2,726,693 - Dsui_2576 0.83 -0.3
2,726,700 + Dsui_2576 0.85 -1.1
2,726,722 + Dsui_2576 0.88 -0.2
2,726,883 + -1.9
2,726,900 + -0.1
2,726,986 + +0.0
2,727,054 - Dsui_2577 0.10 +0.0
2,727,054 - Dsui_2577 0.10 -1.9
2,727,178 + Dsui_2577 0.15 +0.0
2,727,208 - Dsui_2577 0.16 +0.8
2,727,272 - Dsui_2577 0.19 -0.3
2,727,472 + Dsui_2577 0.26 +2.0
2,727,502 + Dsui_2577 0.28 +0.0
2,727,556 + Dsui_2577 0.30 -1.6
2,727,564 - Dsui_2577 0.30 -1.3
2,727,587 + Dsui_2577 0.31 -0.7
2,727,587 + Dsui_2577 0.31 -0.6
2,727,587 + Dsui_2577 0.31 +1.3
2,727,587 + Dsui_2577 0.31 -0.2
2,727,595 - Dsui_2577 0.31 -0.8
2,727,674 + Dsui_2577 0.34 -0.6
2,727,674 + Dsui_2577 0.34 -0.5
2,727,674 + Dsui_2577 0.34 +0.5
2,727,679 + Dsui_2577 0.34 +0.2
2,727,708 + Dsui_2577 0.36 -0.1
2,727,827 - Dsui_2577 0.40 +0.1
2,727,867 + Dsui_2577 0.42 +0.2
2,727,875 - +0.4
2,727,890 - Dsui_2577 0.43 +0.8
2,727,909 + Dsui_2577 0.43 +0.4
2,727,924 - Dsui_2577 0.44 -0.7
2,727,939 - Dsui_2577 0.44 -1.2
2,727,987 + Dsui_2577 0.46 -0.8
2,727,988 - Dsui_2577 0.46 -0.6
2,727,995 - Dsui_2577 0.47 -0.4
2,728,003 + Dsui_2577 0.47 +0.7
2,728,169 + Dsui_2577 0.53 -0.5
2,728,169 + Dsui_2577 0.53 -0.8
2,728,295 + Dsui_2577 0.58 -0.3
2,728,298 + Dsui_2577 0.58 +0.1
2,728,393 + Dsui_2577 0.62 +0.0
2,728,430 - Dsui_2577 0.63 +0.7
2,728,487 + Dsui_2577 0.66 -0.7
2,728,495 - Dsui_2577 0.66 -0.3
2,728,509 - Dsui_2577 0.66 -0.2
2,728,597 + Dsui_2577 0.70 -0.3
2,728,618 - Dsui_2577 0.71 -0.6
2,728,647 + Dsui_2577 0.72 -1.2
2,728,694 + Dsui_2577 0.74 +1.2
2,728,898 - -1.0
2,728,909 + Dsui_2577 0.82 +0.7
2,728,944 + Dsui_2577 0.83 -1.3
2,728,963 + Dsui_2577 0.84 -0.5
2,728,963 + Dsui_2577 0.84 -1.7
2,728,963 + Dsui_2577 0.84 -0.9
2,728,966 - Dsui_2577 0.84 +1.2
2,729,093 + Dsui_2577 0.89 -0.2
2,729,219 + -0.4
2,729,317 - -1.9
2,729,349 + -0.7
2,729,408 + +0.1
2,729,538 + -0.5
2,729,546 - +0.1
2,729,553 - -0.3
2,729,556 - +0.5
2,729,614 + -2.1
2,729,651 - -1.0
2,729,697 + +1.0
2,729,735 + -1.3
2,729,735 + +0.1
2,729,743 - +1.2
2,729,819 + Dsui_2578 0.28 -0.8
2,729,827 - Dsui_2578 0.30 -1.1
2,729,827 - Dsui_2578 0.30 -0.4
2,729,827 - Dsui_2578 0.30 -0.2
2,729,894 + Dsui_2578 0.50 +1.4
2,730,146 + -0.3
2,730,170 - +1.2
2,730,172 - +0.8
2,730,256 + Dsui_2579 0.17 -0.3
2,730,299 - Dsui_2579 0.22 -0.4

Or see this region's nucleotide sequence