Experiment: rich media with hydrogen peroxide 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2575 and Dsui_2576 are separated by 13 nucleotides Dsui_2576 and Dsui_2577 overlap by 4 nucleotides
Dsui_2575: Dsui_2575 - hypothetical protein, at 2,725,416 to 2,726,186
_2575
Dsui_2576: Dsui_2576 - hypothetical protein, at 2,726,200 to 2,726,790
_2576
Dsui_2577: Dsui_2577 - type IV secretory pathway, VirB4 component, at 2,726,787 to 2,729,378
_2577
Position (kb)
2726
2727 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2725.213 kb on - strand at 2725.242 kb on + strand at 2725.338 kb on + strand at 2725.346 kb on - strand at 2725.435 kb on + strand at 2725.444 kb on - strand at 2725.464 kb on - strand at 2725.537 kb on - strand, within Dsui_2575 at 2725.555 kb on + strand, within Dsui_2575 at 2725.560 kb on + strand, within Dsui_2575 at 2725.561 kb on + strand, within Dsui_2575 at 2725.563 kb on - strand, within Dsui_2575 at 2725.598 kb on + strand, within Dsui_2575 at 2725.628 kb on + strand, within Dsui_2575 at 2725.636 kb on - strand, within Dsui_2575 at 2725.665 kb on + strand, within Dsui_2575 at 2725.675 kb on + strand, within Dsui_2575 at 2725.762 kb on + strand, within Dsui_2575 at 2725.767 kb on + strand, within Dsui_2575 at 2725.805 kb on - strand, within Dsui_2575 at 2725.825 kb on + strand, within Dsui_2575 at 2725.869 kb on + strand, within Dsui_2575 at 2725.875 kb on - strand, within Dsui_2575 at 2725.905 kb on - strand, within Dsui_2575 at 2725.922 kb on - strand, within Dsui_2575 at 2726.195 kb on + strand at 2726.201 kb on + strand at 2726.254 kb on - strand at 2726.319 kb on - strand, within Dsui_2576 at 2726.390 kb on + strand at 2726.415 kb on - strand, within Dsui_2576 at 2726.416 kb on - strand, within Dsui_2576 at 2726.416 kb on - strand, within Dsui_2576 at 2726.439 kb on - strand, within Dsui_2576 at 2726.460 kb on + strand, within Dsui_2576 at 2726.598 kb on + strand, within Dsui_2576 at 2726.611 kb on - strand, within Dsui_2576 at 2726.658 kb on - strand, within Dsui_2576 at 2726.693 kb on - strand, within Dsui_2576 at 2726.700 kb on + strand, within Dsui_2576 at 2726.722 kb on + strand, within Dsui_2576 at 2726.883 kb on + strand at 2726.900 kb on + strand at 2726.986 kb on + strand at 2727.054 kb on - strand, within Dsui_2577 at 2727.054 kb on - strand, within Dsui_2577 at 2727.178 kb on + strand, within Dsui_2577 at 2727.208 kb on - strand, within Dsui_2577 at 2727.272 kb on - strand, within Dsui_2577 at 2727.472 kb on + strand, within Dsui_2577 at 2727.502 kb on + strand, within Dsui_2577 at 2727.556 kb on + strand, within Dsui_2577 at 2727.564 kb on - strand, within Dsui_2577 at 2727.587 kb on + strand, within Dsui_2577 at 2727.587 kb on + strand, within Dsui_2577 at 2727.587 kb on + strand, within Dsui_2577 at 2727.587 kb on + strand, within Dsui_2577 at 2727.595 kb on - strand, within Dsui_2577 at 2727.674 kb on + strand, within Dsui_2577 at 2727.674 kb on + strand, within Dsui_2577 at 2727.674 kb on + strand, within Dsui_2577 at 2727.679 kb on + strand, within Dsui_2577 at 2727.708 kb on + strand, within Dsui_2577
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM remove 2,725,213 - -0.3 2,725,242 + -0.8 2,725,338 + +0.5 2,725,346 - -0.1 2,725,435 + -0.5 2,725,444 - -0.9 2,725,464 - -0.2 2,725,537 - Dsui_2575 0.16 +0.0 2,725,555 + Dsui_2575 0.18 -1.7 2,725,560 + Dsui_2575 0.19 -1.0 2,725,561 + Dsui_2575 0.19 -0.4 2,725,563 - Dsui_2575 0.19 -0.1 2,725,598 + Dsui_2575 0.24 -0.0 2,725,628 + Dsui_2575 0.27 -1.2 2,725,636 - Dsui_2575 0.29 -0.4 2,725,665 + Dsui_2575 0.32 +0.2 2,725,675 + Dsui_2575 0.34 -1.1 2,725,762 + Dsui_2575 0.45 +0.5 2,725,767 + Dsui_2575 0.46 +0.6 2,725,805 - Dsui_2575 0.50 -0.4 2,725,825 + Dsui_2575 0.53 +0.6 2,725,869 + Dsui_2575 0.59 -0.0 2,725,875 - Dsui_2575 0.60 +0.1 2,725,905 - Dsui_2575 0.63 -0.2 2,725,922 - Dsui_2575 0.66 -0.6 2,726,195 + +0.0 2,726,201 + +0.2 2,726,254 - +1.0 2,726,319 - Dsui_2576 0.20 +0.4 2,726,390 + +1.3 2,726,415 - Dsui_2576 0.36 -1.7 2,726,416 - Dsui_2576 0.37 -0.3 2,726,416 - Dsui_2576 0.37 -0.6 2,726,439 - Dsui_2576 0.40 +0.2 2,726,460 + Dsui_2576 0.44 -0.4 2,726,598 + Dsui_2576 0.67 +0.2 2,726,611 - Dsui_2576 0.70 -0.6 2,726,658 - Dsui_2576 0.77 -0.3 2,726,693 - Dsui_2576 0.83 -0.3 2,726,700 + Dsui_2576 0.85 -1.1 2,726,722 + Dsui_2576 0.88 -0.2 2,726,883 + -1.9 2,726,900 + -0.1 2,726,986 + +0.0 2,727,054 - Dsui_2577 0.10 +0.0 2,727,054 - Dsui_2577 0.10 -1.9 2,727,178 + Dsui_2577 0.15 +0.0 2,727,208 - Dsui_2577 0.16 +0.8 2,727,272 - Dsui_2577 0.19 -0.3 2,727,472 + Dsui_2577 0.26 +2.0 2,727,502 + Dsui_2577 0.28 +0.0 2,727,556 + Dsui_2577 0.30 -1.6 2,727,564 - Dsui_2577 0.30 -1.3 2,727,587 + Dsui_2577 0.31 -0.7 2,727,587 + Dsui_2577 0.31 -0.6 2,727,587 + Dsui_2577 0.31 +1.3 2,727,587 + Dsui_2577 0.31 -0.2 2,727,595 - Dsui_2577 0.31 -0.8 2,727,674 + Dsui_2577 0.34 -0.6 2,727,674 + Dsui_2577 0.34 -0.5 2,727,674 + Dsui_2577 0.34 +0.5 2,727,679 + Dsui_2577 0.34 +0.2 2,727,708 + Dsui_2577 0.36 -0.1
Or see this region's nucleotide sequence