Experiment: rich media with hydrogen peroxide 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2558 and Dsui_2559 are separated by 383 nucleotides Dsui_2559 and Dsui_2560 are separated by 98 nucleotides Dsui_2560 and Dsui_2561 overlap by 4 nucleotides
Dsui_2558: Dsui_2558 - DNA replication protein, at 2,708,937 to 2,709,671
_2558
Dsui_2559: Dsui_2559 - Protein of unknown function (DUF2523), at 2,710,055 to 2,710,408
_2559
Dsui_2560: Dsui_2560 - zonula occludens toxin, at 2,710,507 to 2,711,397
_2560
Dsui_2561: Dsui_2561 - type II secretory pathway, component PulD, at 2,711,394 to 2,712,605
_2561
Position (kb)
2710
2711
2712 Strain fitness (log2 ratio)
-1
0
1 at 2709.777 kb on + strand at 2709.800 kb on + strand at 2709.800 kb on + strand at 2709.941 kb on + strand at 2709.966 kb on - strand at 2710.004 kb on + strand at 2710.004 kb on + strand at 2710.124 kb on - strand, within Dsui_2559 at 2710.141 kb on + strand, within Dsui_2559 at 2710.149 kb on + strand, within Dsui_2559 at 2710.166 kb on + strand, within Dsui_2559 at 2710.191 kb on + strand, within Dsui_2559 at 2710.280 kb on - strand, within Dsui_2559 at 2710.280 kb on - strand, within Dsui_2559 at 2710.349 kb on + strand at 2710.354 kb on + strand, within Dsui_2559 at 2710.414 kb on + strand at 2710.447 kb on - strand at 2710.546 kb on - strand at 2710.596 kb on + strand at 2710.769 kb on + strand, within Dsui_2560 at 2710.896 kb on - strand at 2710.973 kb on - strand, within Dsui_2560 at 2710.983 kb on - strand, within Dsui_2560 at 2711.031 kb on - strand, within Dsui_2560 at 2711.040 kb on + strand at 2711.048 kb on - strand at 2711.131 kb on - strand at 2711.131 kb on - strand, within Dsui_2560 at 2711.214 kb on - strand, within Dsui_2560 at 2711.408 kb on + strand at 2711.427 kb on + strand at 2711.500 kb on + strand at 2711.567 kb on + strand, within Dsui_2561 at 2711.622 kb on - strand, within Dsui_2561 at 2711.680 kb on - strand, within Dsui_2561 at 2711.738 kb on + strand at 2711.819 kb on + strand, within Dsui_2561 at 2711.866 kb on + strand, within Dsui_2561 at 2712.089 kb on + strand, within Dsui_2561 at 2712.089 kb on + strand, within Dsui_2561 at 2712.094 kb on + strand, within Dsui_2561 at 2712.285 kb on - strand, within Dsui_2561 at 2712.328 kb on + strand, within Dsui_2561 at 2712.336 kb on - strand, within Dsui_2561
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM remove 2,709,777 + -0.8 2,709,800 + -0.6 2,709,800 + +1.7 2,709,941 + +0.7 2,709,966 - +0.3 2,710,004 + -1.0 2,710,004 + -0.8 2,710,124 - Dsui_2559 0.19 -1.0 2,710,141 + Dsui_2559 0.24 -0.5 2,710,149 + Dsui_2559 0.27 +1.0 2,710,166 + Dsui_2559 0.31 -0.2 2,710,191 + Dsui_2559 0.38 -0.8 2,710,280 - Dsui_2559 0.64 -0.0 2,710,280 - Dsui_2559 0.64 -0.4 2,710,349 + -1.0 2,710,354 + Dsui_2559 0.84 -0.3 2,710,414 + +0.9 2,710,447 - +0.4 2,710,546 - +0.0 2,710,596 + -0.3 2,710,769 + Dsui_2560 0.29 -0.6 2,710,896 - -0.3 2,710,973 - Dsui_2560 0.52 -1.1 2,710,983 - Dsui_2560 0.53 -1.3 2,711,031 - Dsui_2560 0.59 -0.2 2,711,040 + -1.0 2,711,048 - +0.4 2,711,131 - +1.2 2,711,131 - Dsui_2560 0.70 -0.6 2,711,214 - Dsui_2560 0.79 -1.1 2,711,408 + -1.1 2,711,427 + +1.6 2,711,500 + +0.0 2,711,567 + Dsui_2561 0.14 +0.2 2,711,622 - Dsui_2561 0.19 -1.1 2,711,680 - Dsui_2561 0.24 +1.2 2,711,738 + +0.4 2,711,819 + Dsui_2561 0.35 -0.3 2,711,866 + Dsui_2561 0.39 +0.4 2,712,089 + Dsui_2561 0.57 +0.1 2,712,089 + Dsui_2561 0.57 -0.3 2,712,094 + Dsui_2561 0.58 -0.4 2,712,285 - Dsui_2561 0.74 +0.6 2,712,328 + Dsui_2561 0.77 +0.4 2,712,336 - Dsui_2561 0.78 -1.0
Or see this region's nucleotide sequence