Strain Fitness in Dechlorosoma suillum PS around Dsui_2527

Experiment: rich media with hydrogen peroxide 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2525 and Dsui_2526 are separated by 191 nucleotidesDsui_2526 and Dsui_2527 overlap by 4 nucleotidesDsui_2527 and Dsui_2528 overlap by 4 nucleotides Dsui_2525: Dsui_2525 - phage-related protein, at 2,674,983 to 2,675,360 _2525 Dsui_2526: Dsui_2526 - site-specific recombinase, DNA invertase Pin, at 2,675,552 to 2,676,145 _2526 Dsui_2527: Dsui_2527 - transposase, TnpA family, at 2,676,142 to 2,679,174 _2527 Dsui_2528: Dsui_2528 - putative signal transduction protein, at 2,679,171 to 2,681,186 _2528 Position (kb) 2676 2677 2678 2679 2680Strain fitness (log2 ratio) -1 0 1 2 3at 2675.151 kb on - strand, within Dsui_2525at 2675.255 kb on - strand, within Dsui_2525at 2675.342 kb on + strandat 2675.350 kb on - strandat 2675.368 kb on + strandat 2675.452 kb on - strandat 2675.546 kb on - strandat 2675.569 kb on - strandat 2675.590 kb on - strandat 2675.593 kb on + strandat 2675.611 kb on - strandat 2675.631 kb on - strand, within Dsui_2526at 2675.732 kb on + strand, within Dsui_2526at 2675.833 kb on + strand, within Dsui_2526at 2675.921 kb on - strand, within Dsui_2526at 2676.040 kb on + strand, within Dsui_2526at 2676.077 kb on + strand, within Dsui_2526at 2676.092 kb on - strandat 2676.104 kb on - strandat 2676.201 kb on - strandat 2676.247 kb on - strandat 2676.251 kb on - strandat 2676.300 kb on + strandat 2676.335 kb on - strandat 2676.335 kb on - strandat 2676.371 kb on - strandat 2676.391 kb on + strandat 2676.586 kb on - strand, within Dsui_2527at 2676.586 kb on - strandat 2676.874 kb on + strand, within Dsui_2527at 2676.933 kb on + strand, within Dsui_2527at 2676.933 kb on + strand, within Dsui_2527at 2676.933 kb on + strand, within Dsui_2527at 2676.941 kb on - strand, within Dsui_2527at 2676.941 kb on - strandat 2676.941 kb on - strand, within Dsui_2527at 2676.941 kb on - strandat 2676.941 kb on - strand, within Dsui_2527at 2677.033 kb on - strand, within Dsui_2527at 2677.312 kb on - strand, within Dsui_2527at 2677.392 kb on - strand, within Dsui_2527at 2677.416 kb on - strand, within Dsui_2527at 2677.427 kb on - strand, within Dsui_2527at 2677.491 kb on + strand, within Dsui_2527at 2677.766 kb on + strand, within Dsui_2527at 2677.785 kb on - strand, within Dsui_2527at 2677.798 kb on - strand, within Dsui_2527at 2677.898 kb on + strand, within Dsui_2527at 2677.994 kb on + strand, within Dsui_2527at 2678.022 kb on + strand, within Dsui_2527at 2678.126 kb on + strand, within Dsui_2527at 2678.231 kb on + strand, within Dsui_2527at 2678.388 kb on + strand, within Dsui_2527at 2678.390 kb on - strand, within Dsui_2527at 2678.633 kb on + strand, within Dsui_2527at 2678.697 kb on + strand, within Dsui_2527at 2678.721 kb on + strand, within Dsui_2527at 2678.729 kb on - strand, within Dsui_2527at 2678.826 kb on + strand, within Dsui_2527at 2678.951 kb on + strandat 2679.373 kb on + strand, within Dsui_2528at 2679.419 kb on - strand, within Dsui_2528at 2679.419 kb on - strand, within Dsui_2528at 2679.484 kb on + strand, within Dsui_2528at 2679.492 kb on - strandat 2679.492 kb on - strand, within Dsui_2528at 2679.520 kb on - strand, within Dsui_2528at 2679.520 kb on - strandat 2679.520 kb on - strand, within Dsui_2528at 2679.637 kb on + strand, within Dsui_2528at 2679.752 kb on + strand, within Dsui_2528at 2679.760 kb on - strand, within Dsui_2528at 2679.780 kb on - strand, within Dsui_2528at 2679.825 kb on - strand, within Dsui_2528at 2679.885 kb on - strand, within Dsui_2528at 2679.953 kb on + strand, within Dsui_2528at 2679.953 kb on + strand, within Dsui_2528at 2680.030 kb on + strand, within Dsui_2528at 2680.046 kb on + strand, within Dsui_2528at 2680.139 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM
remove
2,675,151 - Dsui_2525 0.44 +0.3
2,675,255 - Dsui_2525 0.72 +0.2
2,675,342 + +0.4
2,675,350 - -0.4
2,675,368 + -0.9
2,675,452 - -0.6
2,675,546 - +1.9
2,675,569 - +1.9
2,675,590 - +1.4
2,675,593 + +0.3
2,675,611 - +0.9
2,675,631 - Dsui_2526 0.13 -1.4
2,675,732 + Dsui_2526 0.30 +0.5
2,675,833 + Dsui_2526 0.47 +0.8
2,675,921 - Dsui_2526 0.62 +2.2
2,676,040 + Dsui_2526 0.82 +0.2
2,676,077 + Dsui_2526 0.88 -0.6
2,676,092 - -0.1
2,676,104 - -0.4
2,676,201 - +0.9
2,676,247 - +0.5
2,676,251 - +0.9
2,676,300 + -0.1
2,676,335 - +1.9
2,676,335 - -0.9
2,676,371 - +1.1
2,676,391 + +0.4
2,676,586 - Dsui_2527 0.15 -0.9
2,676,586 - +1.4
2,676,874 + Dsui_2527 0.24 +0.9
2,676,933 + Dsui_2527 0.26 +0.2
2,676,933 + Dsui_2527 0.26 -0.4
2,676,933 + Dsui_2527 0.26 +0.8
2,676,941 - Dsui_2527 0.26 +1.1
2,676,941 - -0.1
2,676,941 - Dsui_2527 0.26 +0.4
2,676,941 - +1.9
2,676,941 - Dsui_2527 0.26 -0.5
2,677,033 - Dsui_2527 0.29 +0.1
2,677,312 - Dsui_2527 0.39 +0.8
2,677,392 - Dsui_2527 0.41 +0.5
2,677,416 - Dsui_2527 0.42 +0.5
2,677,427 - Dsui_2527 0.42 +0.6
2,677,491 + Dsui_2527 0.44 +0.6
2,677,766 + Dsui_2527 0.54 +0.9
2,677,785 - Dsui_2527 0.54 +0.6
2,677,798 - Dsui_2527 0.55 +0.1
2,677,898 + Dsui_2527 0.58 -0.9
2,677,994 + Dsui_2527 0.61 -0.1
2,678,022 + Dsui_2527 0.62 +0.8
2,678,126 + Dsui_2527 0.65 +0.3
2,678,231 + Dsui_2527 0.69 -0.1
2,678,388 + Dsui_2527 0.74 +0.4
2,678,390 - Dsui_2527 0.74 +0.7
2,678,633 + Dsui_2527 0.82 +0.0
2,678,697 + Dsui_2527 0.84 +0.1
2,678,721 + Dsui_2527 0.85 +0.6
2,678,729 - Dsui_2527 0.85 +0.5
2,678,826 + Dsui_2527 0.88 -0.3
2,678,951 + -0.2
2,679,373 + Dsui_2528 0.10 +0.6
2,679,419 - Dsui_2528 0.12 +0.6
2,679,419 - Dsui_2528 0.12 +0.4
2,679,484 + Dsui_2528 0.16 +0.2
2,679,492 - +0.9
2,679,492 - Dsui_2528 0.16 +0.4
2,679,520 - Dsui_2528 0.17 +0.5
2,679,520 - +0.9
2,679,520 - Dsui_2528 0.17 +0.3
2,679,637 + Dsui_2528 0.23 -0.6
2,679,752 + Dsui_2528 0.29 +0.0
2,679,760 - Dsui_2528 0.29 +0.4
2,679,780 - Dsui_2528 0.30 -0.3
2,679,825 - Dsui_2528 0.32 -0.0
2,679,885 - Dsui_2528 0.35 +0.5
2,679,953 + Dsui_2528 0.39 -0.2
2,679,953 + Dsui_2528 0.39 +0.8
2,680,030 + Dsui_2528 0.43 +0.4
2,680,046 + Dsui_2528 0.43 +1.3
2,680,139 - +2.9

Or see this region's nucleotide sequence