Experiment: rich media with hydrogen peroxide 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2501 and Dsui_2502 overlap by 4 nucleotides Dsui_2502 and Dsui_2503 are separated by 2 nucleotides Dsui_2503 and Dsui_2504 are separated by 244 nucleotides Dsui_2504 and Dsui_2505 overlap by 17 nucleotides
Dsui_2501: Dsui_2501 - TniQ protein, at 2,648,166 to 2,649,332
_2501
Dsui_2502: Dsui_2502 - TniB protein, at 2,649,329 to 2,650,237
_2502
Dsui_2503: Dsui_2503 - Mu transposase/integrase, at 2,650,240 to 2,651,922
_2503
Dsui_2504: Dsui_2504 - hypothetical protein, at 2,652,167 to 2,652,547
_2504
Dsui_2505: Dsui_2505 - putative transcriptional regulator, at 2,652,531 to 2,652,830
_2505
Position (kb)
2650
2651
2652 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2649.364 kb on + strand at 2649.566 kb on + strand, within Dsui_2502 at 2649.703 kb on + strand, within Dsui_2502 at 2649.711 kb on - strand, within Dsui_2502 at 2649.824 kb on - strand, within Dsui_2502 at 2650.079 kb on + strand, within Dsui_2502 at 2650.216 kb on - strand at 2650.238 kb on + strand at 2650.681 kb on + strand at 2650.898 kb on + strand, within Dsui_2503 at 2651.250 kb on + strand at 2651.457 kb on - strand, within Dsui_2503 at 2651.474 kb on + strand, within Dsui_2503 at 2651.492 kb on - strand, within Dsui_2503 at 2651.717 kb on - strand, within Dsui_2503 at 2651.761 kb on - strand at 2651.771 kb on - strand at 2651.771 kb on - strand at 2651.816 kb on - strand at 2651.945 kb on + strand at 2651.945 kb on + strand at 2651.965 kb on - strand at 2652.015 kb on + strand at 2652.015 kb on - strand at 2652.041 kb on + strand at 2652.206 kb on + strand, within Dsui_2504 at 2652.278 kb on + strand, within Dsui_2504 at 2652.314 kb on - strand at 2652.417 kb on + strand, within Dsui_2504 at 2652.443 kb on + strand, within Dsui_2504 at 2652.462 kb on + strand, within Dsui_2504 at 2652.470 kb on - strand, within Dsui_2504 at 2652.495 kb on - strand at 2652.495 kb on - strand, within Dsui_2504 at 2652.495 kb on - strand, within Dsui_2504
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM remove 2,649,364 + +0.9 2,649,566 + Dsui_2502 0.26 -0.4 2,649,703 + Dsui_2502 0.41 -1.4 2,649,711 - Dsui_2502 0.42 +0.9 2,649,824 - Dsui_2502 0.54 +0.9 2,650,079 + Dsui_2502 0.83 +1.3 2,650,216 - -1.1 2,650,238 + -0.2 2,650,681 + +1.2 2,650,898 + Dsui_2503 0.39 +0.9 2,651,250 + -0.4 2,651,457 - Dsui_2503 0.72 +0.4 2,651,474 + Dsui_2503 0.73 -0.8 2,651,492 - Dsui_2503 0.74 +0.6 2,651,717 - Dsui_2503 0.88 +0.7 2,651,761 - +0.6 2,651,771 - +0.0 2,651,771 - +0.7 2,651,816 - +1.1 2,651,945 + -0.1 2,651,945 + +0.4 2,651,965 - +1.9 2,652,015 + +0.4 2,652,015 - +0.3 2,652,041 + -1.8 2,652,206 + Dsui_2504 0.10 +0.3 2,652,278 + Dsui_2504 0.29 -0.5 2,652,314 - +1.9 2,652,417 + Dsui_2504 0.66 -0.1 2,652,443 + Dsui_2504 0.72 +0.1 2,652,462 + Dsui_2504 0.77 +0.6 2,652,470 - Dsui_2504 0.80 +1.3 2,652,495 - -0.1 2,652,495 - Dsui_2504 0.86 +0.2 2,652,495 - Dsui_2504 0.86 +0.2
Or see this region's nucleotide sequence