Experiment: rich media with hydrogen peroxide 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2453 and Dsui_2454 are separated by 112 nucleotides Dsui_2454 and Dsui_2455 are separated by 30 nucleotides Dsui_2455 and Dsui_2456 overlap by 14 nucleotides Dsui_2456 and Dsui_2457 are separated by 56 nucleotides
Dsui_2453: Dsui_2453 - RNA polymerase sigma factor RpoE, at 2,612,122 to 2,612,721
_2453
Dsui_2454: Dsui_2454 - Positive regulator of sigma E activity, at 2,612,834 to 2,613,265
_2454
Dsui_2455: Dsui_2455 - periplasmic serine protease, Do/DeqQ family, at 2,613,296 to 2,614,741
_2455
Dsui_2456: Dsui_2456 - Glutaredoxin-like domain (DUF836), at 2,614,728 to 2,615,000
_2456
Dsui_2457: Dsui_2457 - GTP-binding protein LepA, at 2,615,057 to 2,616,850
_2457
Position (kb)
2613
2614
2615 Strain fitness (log2 ratio)
-1
0
1
2 at 2612.786 kb on + strand at 2612.786 kb on + strand at 2612.818 kb on + strand at 2612.916 kb on + strand, within Dsui_2454 at 2612.916 kb on + strand, within Dsui_2454 at 2612.916 kb on + strand, within Dsui_2454 at 2613.137 kb on + strand, within Dsui_2454 at 2613.211 kb on + strand, within Dsui_2454 at 2613.211 kb on + strand, within Dsui_2454 at 2613.245 kb on + strand at 2613.274 kb on + strand at 2613.402 kb on + strand at 2613.402 kb on + strand at 2613.426 kb on + strand at 2613.437 kb on - strand at 2613.456 kb on - strand, within Dsui_2455 at 2613.478 kb on + strand, within Dsui_2455 at 2613.617 kb on + strand, within Dsui_2455 at 2613.617 kb on + strand, within Dsui_2455 at 2613.636 kb on + strand, within Dsui_2455 at 2613.705 kb on + strand, within Dsui_2455 at 2613.733 kb on + strand, within Dsui_2455 at 2613.792 kb on + strand, within Dsui_2455 at 2613.792 kb on + strand, within Dsui_2455 at 2613.792 kb on + strand, within Dsui_2455 at 2613.792 kb on + strand, within Dsui_2455 at 2613.794 kb on + strand, within Dsui_2455 at 2613.902 kb on + strand, within Dsui_2455 at 2613.903 kb on + strand, within Dsui_2455 at 2613.907 kb on + strand, within Dsui_2455 at 2614.159 kb on + strand, within Dsui_2455 at 2614.167 kb on - strand at 2614.231 kb on + strand, within Dsui_2455 at 2614.248 kb on + strand, within Dsui_2455 at 2614.275 kb on + strand, within Dsui_2455 at 2614.314 kb on + strand, within Dsui_2455 at 2614.393 kb on + strand, within Dsui_2455 at 2614.460 kb on - strand at 2614.713 kb on + strand at 2614.721 kb on + strand at 2614.721 kb on - strand at 2614.723 kb on + strand at 2614.754 kb on + strand at 2614.762 kb on - strand, within Dsui_2456 at 2614.762 kb on - strand, within Dsui_2456 at 2614.764 kb on + strand, within Dsui_2456 at 2614.787 kb on + strand, within Dsui_2456 at 2614.789 kb on + strand, within Dsui_2456 at 2614.963 kb on + strand, within Dsui_2456 at 2614.963 kb on + strand, within Dsui_2456 at 2615.031 kb on + strand at 2615.055 kb on + strand at 2615.134 kb on + strand at 2615.174 kb on + strand at 2615.271 kb on + strand, within Dsui_2457 at 2615.384 kb on + strand, within Dsui_2457 at 2615.424 kb on + strand, within Dsui_2457 at 2615.704 kb on + strand, within Dsui_2457 at 2615.731 kb on + strand, within Dsui_2457
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM remove 2,612,786 + -0.3 2,612,786 + +0.8 2,612,818 + +0.2 2,612,916 + Dsui_2454 0.19 -1.0 2,612,916 + Dsui_2454 0.19 -0.1 2,612,916 + Dsui_2454 0.19 -0.9 2,613,137 + Dsui_2454 0.70 -0.9 2,613,211 + Dsui_2454 0.87 +0.2 2,613,211 + Dsui_2454 0.87 -0.3 2,613,245 + -0.1 2,613,274 + -0.2 2,613,402 + -0.2 2,613,402 + +0.1 2,613,426 + +0.0 2,613,437 - +0.2 2,613,456 - Dsui_2455 0.11 +1.1 2,613,478 + Dsui_2455 0.13 +0.3 2,613,617 + Dsui_2455 0.22 +0.5 2,613,617 + Dsui_2455 0.22 -0.5 2,613,636 + Dsui_2455 0.24 +0.3 2,613,705 + Dsui_2455 0.28 +0.5 2,613,733 + Dsui_2455 0.30 +0.6 2,613,792 + Dsui_2455 0.34 +0.4 2,613,792 + Dsui_2455 0.34 +0.0 2,613,792 + Dsui_2455 0.34 +0.9 2,613,792 + Dsui_2455 0.34 +0.9 2,613,794 + Dsui_2455 0.34 +0.2 2,613,902 + Dsui_2455 0.42 +0.2 2,613,903 + Dsui_2455 0.42 +0.0 2,613,907 + Dsui_2455 0.42 +0.2 2,614,159 + Dsui_2455 0.60 +0.2 2,614,167 - +0.8 2,614,231 + Dsui_2455 0.65 +0.9 2,614,248 + Dsui_2455 0.66 +0.5 2,614,275 + Dsui_2455 0.68 -0.0 2,614,314 + Dsui_2455 0.70 +0.2 2,614,393 + Dsui_2455 0.76 +0.1 2,614,460 - +1.8 2,614,713 + +0.5 2,614,721 + +0.3 2,614,721 - +0.4 2,614,723 + -0.2 2,614,754 + -0.3 2,614,762 - Dsui_2456 0.12 +0.3 2,614,762 - Dsui_2456 0.12 +0.3 2,614,764 + Dsui_2456 0.13 +0.4 2,614,787 + Dsui_2456 0.22 -0.0 2,614,789 + Dsui_2456 0.22 +0.2 2,614,963 + Dsui_2456 0.86 +0.7 2,614,963 + Dsui_2456 0.86 +0.4 2,615,031 + +0.2 2,615,055 + +0.4 2,615,134 + -0.5 2,615,174 + -1.7 2,615,271 + Dsui_2457 0.12 -0.6 2,615,384 + Dsui_2457 0.18 -0.3 2,615,424 + Dsui_2457 0.20 -1.0 2,615,704 + Dsui_2457 0.36 +0.1 2,615,731 + Dsui_2457 0.38 -1.4
Or see this region's nucleotide sequence