Strain Fitness in Dechlorosoma suillum PS around Dsui_2252

Experiment: rich media with hydrogen peroxide 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2251 and Dsui_2252 are separated by 18 nucleotidesDsui_2252 and Dsui_2253 are separated by 220 nucleotides Dsui_2251: Dsui_2251 - signal transduction histidine kinase, at 2,398,675 to 2,400,147 _2251 Dsui_2252: Dsui_2252 - transcriptional regulator with HTH domain and aminotransferase domain, at 2,400,166 to 2,401,707 _2252 Dsui_2253: Dsui_2253 - benzoate transporter, at 2,401,928 to 2,403,154 _2253 Position (kb) 2400 2401 2402Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2399.258 kb on - strand, within Dsui_2251at 2399.297 kb on + strandat 2399.525 kb on - strand, within Dsui_2251at 2399.572 kb on - strandat 2399.612 kb on + strand, within Dsui_2251at 2399.618 kb on + strandat 2399.709 kb on + strand, within Dsui_2251at 2399.779 kb on - strandat 2399.808 kb on + strand, within Dsui_2251at 2399.876 kb on + strandat 2399.978 kb on + strand, within Dsui_2251at 2399.982 kb on - strand, within Dsui_2251at 2399.983 kb on - strand, within Dsui_2251at 2400.132 kb on - strandat 2400.137 kb on - strandat 2400.141 kb on + strandat 2400.149 kb on - strandat 2400.149 kb on - strandat 2400.283 kb on - strandat 2400.290 kb on + strandat 2400.507 kb on - strand, within Dsui_2252at 2400.587 kb on + strandat 2400.617 kb on - strand, within Dsui_2252at 2400.630 kb on + strandat 2400.687 kb on + strand, within Dsui_2252at 2400.812 kb on - strand, within Dsui_2252at 2400.947 kb on - strand, within Dsui_2252at 2401.025 kb on - strand, within Dsui_2252at 2401.100 kb on + strand, within Dsui_2252at 2401.149 kb on - strand, within Dsui_2252at 2401.154 kb on + strand, within Dsui_2252at 2401.162 kb on - strand, within Dsui_2252at 2401.541 kb on - strand, within Dsui_2252at 2401.584 kb on + strandat 2401.634 kb on + strandat 2401.664 kb on - strandat 2401.670 kb on - strandat 2401.886 kb on + strandat 2401.920 kb on - strandat 2402.021 kb on - strandat 2402.241 kb on - strandat 2402.255 kb on - strand, within Dsui_2253at 2402.407 kb on + strandat 2402.580 kb on - strandat 2402.677 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM
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2,399,258 - Dsui_2251 0.40 -0.3
2,399,297 + +0.7
2,399,525 - Dsui_2251 0.58 -0.5
2,399,572 - +1.7
2,399,612 + Dsui_2251 0.64 -0.7
2,399,618 + +2.0
2,399,709 + Dsui_2251 0.70 -1.6
2,399,779 - +0.1
2,399,808 + Dsui_2251 0.77 -1.7
2,399,876 + +3.3
2,399,978 + Dsui_2251 0.88 -0.3
2,399,982 - Dsui_2251 0.89 -0.1
2,399,983 - Dsui_2251 0.89 -0.4
2,400,132 - -0.9
2,400,137 - -2.4
2,400,141 + +1.0
2,400,149 - +0.3
2,400,149 - +0.7
2,400,283 - +0.3
2,400,290 + +0.3
2,400,507 - Dsui_2252 0.22 +2.1
2,400,587 + -0.3
2,400,617 - Dsui_2252 0.29 +0.1
2,400,630 + +2.7
2,400,687 + Dsui_2252 0.34 +0.3
2,400,812 - Dsui_2252 0.42 +0.3
2,400,947 - Dsui_2252 0.51 -0.6
2,401,025 - Dsui_2252 0.56 -2.5
2,401,100 + Dsui_2252 0.61 -1.1
2,401,149 - Dsui_2252 0.64 -0.2
2,401,154 + Dsui_2252 0.64 +0.7
2,401,162 - Dsui_2252 0.65 +1.0
2,401,541 - Dsui_2252 0.89 -0.6
2,401,584 + +0.1
2,401,634 + +2.1
2,401,664 - -0.0
2,401,670 - -0.3
2,401,886 + +0.1
2,401,920 - +0.7
2,402,021 - +1.7
2,402,241 - +0.1
2,402,255 - Dsui_2253 0.27 -1.3
2,402,407 + +0.7
2,402,580 - +0.5
2,402,677 - +0.1

Or see this region's nucleotide sequence