Experiment: rich media with hydrogen peroxide 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2040 and Dsui_2041 are separated by 60 nucleotides Dsui_2041 and Dsui_2042 are separated by 20 nucleotides Dsui_2042 and Dsui_2043 are separated by 173 nucleotides
Dsui_2040: Dsui_2040 - putative CoA-binding protein, at 2,159,442 to 2,159,900
_2040
Dsui_2041: Dsui_2041 - enoyl-CoA hydratase/carnithine racemase, at 2,159,961 to 2,160,746
_2041
Dsui_2042: Dsui_2042 - cystathionine beta-lyase/cystathionine gamma-synthase, at 2,160,767 to 2,161,945
_2042
Dsui_2043: Dsui_2043 - cysteine synthase, at 2,162,119 to 2,163,624
_2043
Position (kb)
2160
2161
2162 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2159.854 kb on - strand, within Dsui_2040 at 2159.872 kb on + strand at 2159.876 kb on + strand at 2159.880 kb on - strand at 2159.945 kb on + strand at 2159.951 kb on - strand at 2159.978 kb on - strand at 2160.064 kb on + strand, within Dsui_2041 at 2160.110 kb on - strand, within Dsui_2041 at 2160.117 kb on - strand, within Dsui_2041 at 2160.119 kb on + strand at 2160.220 kb on - strand, within Dsui_2041 at 2160.246 kb on - strand, within Dsui_2041 at 2160.261 kb on + strand at 2160.269 kb on - strand, within Dsui_2041 at 2160.277 kb on - strand at 2160.324 kb on - strand, within Dsui_2041 at 2160.324 kb on - strand at 2160.460 kb on + strand at 2160.470 kb on + strand at 2160.506 kb on - strand, within Dsui_2041 at 2160.592 kb on - strand at 2160.625 kb on + strand, within Dsui_2041 at 2160.696 kb on - strand at 2160.765 kb on - strand at 2160.789 kb on - strand at 2160.789 kb on - strand at 2160.792 kb on + strand at 2160.792 kb on + strand at 2160.868 kb on + strand at 2160.876 kb on - strand at 2160.876 kb on - strand at 2160.996 kb on + strand at 2161.004 kb on - strand at 2161.041 kb on + strand at 2161.080 kb on + strand at 2161.173 kb on - strand, within Dsui_2042 at 2161.211 kb on + strand, within Dsui_2042 at 2161.305 kb on - strand, within Dsui_2042 at 2161.401 kb on + strand at 2161.565 kb on - strand, within Dsui_2042 at 2161.610 kb on + strand, within Dsui_2042 at 2161.610 kb on + strand at 2161.636 kb on - strand, within Dsui_2042 at 2161.674 kb on - strand at 2161.705 kb on - strand, within Dsui_2042 at 2161.771 kb on + strand, within Dsui_2042 at 2161.798 kb on - strand, within Dsui_2042 at 2161.881 kb on + strand at 2161.941 kb on + strand at 2161.941 kb on + strand at 2161.976 kb on + strand at 2161.994 kb on + strand at 2162.250 kb on - strand at 2162.782 kb on - strand, within Dsui_2043 at 2162.862 kb on + strand, within Dsui_2043
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM remove 2,159,854 - Dsui_2040 0.90 +0.2 2,159,872 + +1.7 2,159,876 + +0.4 2,159,880 - +0.4 2,159,945 + +0.4 2,159,951 - +0.2 2,159,978 - +0.0 2,160,064 + Dsui_2041 0.13 +0.3 2,160,110 - Dsui_2041 0.19 -0.1 2,160,117 - Dsui_2041 0.20 -0.0 2,160,119 + +2.7 2,160,220 - Dsui_2041 0.33 +0.9 2,160,246 - Dsui_2041 0.36 -1.7 2,160,261 + +0.1 2,160,269 - Dsui_2041 0.39 -0.4 2,160,277 - +1.0 2,160,324 - Dsui_2041 0.46 -0.2 2,160,324 - +0.1 2,160,460 + -0.3 2,160,470 + -0.9 2,160,506 - Dsui_2041 0.69 +0.4 2,160,592 - +0.1 2,160,625 + Dsui_2041 0.84 -0.3 2,160,696 - -0.6 2,160,765 - -1.1 2,160,789 - +3.3 2,160,789 - -0.4 2,160,792 + -0.9 2,160,792 + -0.6 2,160,868 + +0.5 2,160,876 - -0.4 2,160,876 - +1.7 2,160,996 + +1.7 2,161,004 - +1.1 2,161,041 + +1.3 2,161,080 + +1.1 2,161,173 - Dsui_2042 0.34 -0.9 2,161,211 + Dsui_2042 0.38 +0.4 2,161,305 - Dsui_2042 0.46 -0.1 2,161,401 + -0.9 2,161,565 - Dsui_2042 0.68 -0.4 2,161,610 + Dsui_2042 0.72 -0.9 2,161,610 + +1.1 2,161,636 - Dsui_2042 0.74 +0.4 2,161,674 - +0.7 2,161,705 - Dsui_2042 0.80 -0.9 2,161,771 + Dsui_2042 0.85 -1.4 2,161,798 - Dsui_2042 0.87 -2.1 2,161,881 + +0.1 2,161,941 + +0.7 2,161,941 + +0.7 2,161,976 + -0.4 2,161,994 + +0.1 2,162,250 - +0.3 2,162,782 - Dsui_2043 0.44 +0.4 2,162,862 + Dsui_2043 0.49 +0.3
Or see this region's nucleotide sequence