Experiment: rich media with hydrogen peroxide 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2029 and Dsui_2030 are separated by 79 nucleotides Dsui_2030 and Dsui_2031 are separated by 423 nucleotides Dsui_2031 and Dsui_2032 are separated by 143 nucleotides
Dsui_2029: Dsui_2029 - putative hydrolase or acyltransferase of alpha/beta superfamily, at 2,147,645 to 2,148,565
_2029
Dsui_2030: Dsui_2030 - branched-chain amino acid aminotransferase, group I, at 2,148,645 to 2,149,571
_2030
Dsui_2031: Dsui_2031 - putative thioesterase, at 2,149,995 to 2,150,423
_2031
Dsui_2032: Dsui_2032 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,150,567 to 2,153,197
_2032
Position (kb)
2148
2149
2150 Strain fitness (log2 ratio)
-1
0
1
2 at 2147.658 kb on - strand at 2147.710 kb on - strand at 2147.967 kb on - strand, within Dsui_2029 at 2147.967 kb on - strand, within Dsui_2029 at 2148.089 kb on - strand, within Dsui_2029 at 2148.428 kb on + strand at 2148.535 kb on - strand at 2148.560 kb on + strand at 2148.560 kb on + strand at 2148.678 kb on + strand at 2148.690 kb on + strand at 2148.706 kb on + strand at 2148.746 kb on + strand at 2148.862 kb on - strand at 2148.908 kb on + strand, within Dsui_2030 at 2148.955 kb on - strand at 2149.058 kb on + strand at 2149.098 kb on - strand, within Dsui_2030 at 2149.098 kb on - strand at 2149.125 kb on - strand at 2149.189 kb on + strand at 2149.235 kb on + strand, within Dsui_2030 at 2149.290 kb on + strand at 2149.290 kb on + strand, within Dsui_2030 at 2149.312 kb on - strand, within Dsui_2030 at 2149.326 kb on - strand at 2149.363 kb on + strand at 2149.495 kb on - strand at 2149.587 kb on - strand at 2149.656 kb on + strand at 2149.749 kb on - strand at 2149.911 kb on + strand at 2149.919 kb on - strand at 2149.941 kb on - strand at 2150.002 kb on + strand at 2150.030 kb on - strand at 2150.030 kb on - strand at 2150.044 kb on - strand at 2150.077 kb on + strand at 2150.085 kb on - strand, within Dsui_2031 at 2150.093 kb on + strand at 2150.116 kb on - strand, within Dsui_2031 at 2150.198 kb on - strand, within Dsui_2031 at 2150.271 kb on - strand, within Dsui_2031 at 2150.318 kb on + strand at 2150.385 kb on + strand at 2150.392 kb on - strand at 2150.400 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM remove 2,147,658 - +0.3 2,147,710 - +0.9 2,147,967 - Dsui_2029 0.35 -0.0 2,147,967 - Dsui_2029 0.35 -0.9 2,148,089 - Dsui_2029 0.48 +0.7 2,148,428 + +1.7 2,148,535 - +0.4 2,148,560 + +1.7 2,148,560 + -0.3 2,148,678 + +0.1 2,148,690 + +1.0 2,148,706 + +2.3 2,148,746 + +1.1 2,148,862 - +0.7 2,148,908 + Dsui_2030 0.28 -0.6 2,148,955 - +0.7 2,149,058 + +0.7 2,149,098 - Dsui_2030 0.49 +0.3 2,149,098 - +1.7 2,149,125 - -0.3 2,149,189 + -0.3 2,149,235 + Dsui_2030 0.64 +0.1 2,149,290 + +0.7 2,149,290 + Dsui_2030 0.70 -0.8 2,149,312 - Dsui_2030 0.72 -1.4 2,149,326 - +1.7 2,149,363 + +2.7 2,149,495 - +1.7 2,149,587 - -0.2 2,149,656 + +0.1 2,149,749 - +0.6 2,149,911 + +0.7 2,149,919 - -0.6 2,149,941 - +0.1 2,150,002 + +1.7 2,150,030 - -0.4 2,150,030 - +0.1 2,150,044 - -0.9 2,150,077 + +0.7 2,150,085 - Dsui_2031 0.21 +0.9 2,150,093 + -0.9 2,150,116 - Dsui_2031 0.28 +0.1 2,150,198 - Dsui_2031 0.47 +0.9 2,150,271 - Dsui_2031 0.64 -0.6 2,150,318 + +0.7 2,150,385 + +1.7 2,150,392 - +2.0 2,150,400 - -0.4
Or see this region's nucleotide sequence