Strain Fitness in Dechlorosoma suillum PS around Dsui_1978

Experiment: rich media with hydrogen peroxide 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1977 and Dsui_1978 are separated by 13 nucleotidesDsui_1978 and Dsui_1979 are separated by 12 nucleotides Dsui_1977: Dsui_1977 - dihydrodipicolinate synthase, at 2,085,978 to 2,086,856 _1977 Dsui_1978: Dsui_1978 - putative lipoprotein, at 2,086,870 to 2,088,003 _1978 Dsui_1979: Dsui_1979 - metal-dependent hydrolase, beta-lactamase superfamily I, at 2,088,016 to 2,088,783 _1979 Position (kb) 2086 2087 2088 2089Strain fitness (log2 ratio) -1 0 1at 2085.872 kb on - strandat 2085.890 kb on + strandat 2085.890 kb on + strandat 2085.895 kb on + strandat 2085.898 kb on - strandat 2085.898 kb on - strandat 2085.910 kb on + strandat 2085.910 kb on + strandat 2085.910 kb on + strandat 2085.910 kb on + strandat 2085.918 kb on + strandat 2085.918 kb on + strandat 2085.918 kb on + strandat 2085.918 kb on + strandat 2085.918 kb on + strandat 2085.918 kb on - strandat 2085.931 kb on - strandat 2085.938 kb on + strandat 2087.754 kb on + strand, within Dsui_1978at 2087.754 kb on + strand, within Dsui_1978at 2087.907 kb on + strandat 2088.182 kb on - strand, within Dsui_1979at 2088.204 kb on - strand, within Dsui_1979at 2088.308 kb on - strand, within Dsui_1979at 2088.324 kb on + strand, within Dsui_1979at 2088.324 kb on + strand, within Dsui_1979at 2088.332 kb on - strand, within Dsui_1979at 2088.332 kb on - strand, within Dsui_1979at 2088.455 kb on + strand, within Dsui_1979at 2088.482 kb on + strand, within Dsui_1979at 2088.490 kb on - strand, within Dsui_1979at 2088.550 kb on + strand, within Dsui_1979at 2088.626 kb on + strand, within Dsui_1979at 2088.685 kb on - strand, within Dsui_1979at 2088.685 kb on - strand, within Dsui_1979at 2088.709 kb on + strandat 2088.717 kb on - strandat 2088.727 kb on + strandat 2088.790 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM
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2,085,872 - +0.6
2,085,890 + -0.4
2,085,890 + +0.3
2,085,895 + -0.1
2,085,898 - +0.7
2,085,898 - -0.1
2,085,910 + +0.2
2,085,910 + -0.2
2,085,910 + +0.3
2,085,910 + -0.1
2,085,918 + -0.5
2,085,918 + -0.2
2,085,918 + -1.0
2,085,918 + +0.5
2,085,918 + +0.0
2,085,918 - +0.7
2,085,931 - +0.1
2,085,938 + +0.5
2,087,754 + Dsui_1978 0.78 +0.0
2,087,754 + Dsui_1978 0.78 +0.5
2,087,907 + -0.6
2,088,182 - Dsui_1979 0.22 -0.1
2,088,204 - Dsui_1979 0.24 -0.2
2,088,308 - Dsui_1979 0.38 +0.3
2,088,324 + Dsui_1979 0.40 +0.4
2,088,324 + Dsui_1979 0.40 +0.5
2,088,332 - Dsui_1979 0.41 -0.2
2,088,332 - Dsui_1979 0.41 +0.4
2,088,455 + Dsui_1979 0.57 +0.1
2,088,482 + Dsui_1979 0.61 +0.6
2,088,490 - Dsui_1979 0.62 -0.9
2,088,550 + Dsui_1979 0.70 +0.1
2,088,626 + Dsui_1979 0.79 +0.5
2,088,685 - Dsui_1979 0.87 +0.1
2,088,685 - Dsui_1979 0.87 +0.5
2,088,709 + -0.2
2,088,717 - +0.1
2,088,727 + +0.4
2,088,790 - +0.3

Or see this region's nucleotide sequence