Strain Fitness in Dechlorosoma suillum PS around Dsui_1916

Experiment: rich media with hydrogen peroxide 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_1915 and Dsui_1916 are separated by 13 nucleotidesDsui_1916 and Dsui_1917 are separated by 21 nucleotidesDsui_1917 and Dsui_1918 are separated by 96 nucleotides Dsui_1915: Dsui_1915 - cytochrome bd-type quinol oxidase, subunit 1, at 2,016,886 to 2,018,433 _1915 Dsui_1916: Dsui_1916 - cytochrome d oxidase cyd, subunit II, at 2,018,447 to 2,019,586 _1916 Dsui_1917: Dsui_1917 - cyd operon protein YbgT, at 2,019,608 to 2,019,703 _1917 Dsui_1918: Dsui_1918 - TIGR03549 family protein, at 2,019,800 to 2,022,013 _1918 Position (kb) 2018 2019 2020Strain fitness (log2 ratio) -1 0 1 2at 2017.648 kb on - strandat 2017.648 kb on - strand, within Dsui_1915at 2017.707 kb on + strandat 2017.864 kb on + strand, within Dsui_1915at 2017.908 kb on + strandat 2017.938 kb on + strand, within Dsui_1915at 2017.946 kb on - strandat 2017.981 kb on - strand, within Dsui_1915at 2018.123 kb on + strandat 2018.198 kb on + strandat 2018.365 kb on - strandat 2018.427 kb on + strandat 2018.496 kb on - strandat 2018.503 kb on + strandat 2018.799 kb on + strandat 2018.834 kb on + strandat 2018.848 kb on - strand, within Dsui_1916at 2018.929 kb on + strand, within Dsui_1916at 2019.042 kb on - strand, within Dsui_1916at 2019.105 kb on + strand, within Dsui_1916at 2019.249 kb on + strand, within Dsui_1916at 2019.259 kb on + strand, within Dsui_1916at 2019.342 kb on + strandat 2019.396 kb on + strandat 2019.404 kb on - strandat 2019.414 kb on - strandat 2019.414 kb on - strandat 2019.471 kb on + strand, within Dsui_1916at 2019.568 kb on + strandat 2019.576 kb on - strandat 2019.896 kb on + strandat 2019.909 kb on - strandat 2019.931 kb on + strandat 2020.073 kb on + strand, within Dsui_1918at 2020.179 kb on - strand, within Dsui_1918at 2020.198 kb on - strand, within Dsui_1918at 2020.198 kb on - strand, within Dsui_1918at 2020.316 kb on - strand, within Dsui_1918at 2020.372 kb on + strandat 2020.444 kb on + strand, within Dsui_1918

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM
remove
2,017,648 - +1.8
2,017,648 - Dsui_1915 0.49 -0.0
2,017,707 + +1.8
2,017,864 + Dsui_1915 0.63 -0.9
2,017,908 + -0.0
2,017,938 + Dsui_1915 0.68 -1.0
2,017,946 - -0.6
2,017,981 - Dsui_1915 0.71 -0.5
2,018,123 + +1.2
2,018,198 + +1.0
2,018,365 - -0.2
2,018,427 + +0.8
2,018,496 - -0.2
2,018,503 + -0.1
2,018,799 + +1.8
2,018,834 + +0.5
2,018,848 - Dsui_1916 0.35 +1.2
2,018,929 + Dsui_1916 0.42 +0.5
2,019,042 - Dsui_1916 0.52 -0.4
2,019,105 + Dsui_1916 0.58 +1.3
2,019,249 + Dsui_1916 0.70 +0.4
2,019,259 + Dsui_1916 0.71 +0.5
2,019,342 + +0.2
2,019,396 + +1.8
2,019,404 - +0.4
2,019,414 - -0.8
2,019,414 - +0.4
2,019,471 + Dsui_1916 0.90 +0.8
2,019,568 + -0.4
2,019,576 - -0.5
2,019,896 + +0.8
2,019,909 - +0.3
2,019,931 + -1.4
2,020,073 + Dsui_1918 0.12 -0.8
2,020,179 - Dsui_1918 0.17 -0.1
2,020,198 - Dsui_1918 0.18 +0.3
2,020,198 - Dsui_1918 0.18 -0.4
2,020,316 - Dsui_1918 0.23 +0.1
2,020,372 + -0.8
2,020,444 + Dsui_1918 0.29 +0.3

Or see this region's nucleotide sequence