Experiment: rich media with hydrogen peroxide 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1881 and Dsui_1882 are separated by 62 nucleotides Dsui_1882 and Dsui_1883 are separated by 103 nucleotides Dsui_1883 and Dsui_1884 are separated by 0 nucleotides
Dsui_1881: Dsui_1881 - methyl-accepting chemotaxis protein, at 1,978,041 to 1,980,077
_1881
Dsui_1882: Dsui_1882 - hypothetical protein, at 1,980,140 to 1,980,637
_1882
Dsui_1883: Dsui_1883 - ATPase component of ABC transporters with duplicated ATPase domain, at 1,980,741 to 1,982,663
_1883
Dsui_1884: Dsui_1884 - histidine kinase, at 1,982,664 to 1,983,827
_1884
Position (kb)
1980
1981
1982
1983 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1979.782 kb on + strand, within Dsui_1881 at 1979.790 kb on - strand, within Dsui_1881 at 1979.897 kb on - strand at 1979.911 kb on + strand at 1979.919 kb on - strand at 1979.984 kb on - strand at 1980.000 kb on - strand at 1980.032 kb on - strand at 1980.062 kb on - strand at 1980.174 kb on - strand at 1980.268 kb on + strand, within Dsui_1882 at 1980.302 kb on + strand, within Dsui_1882 at 1980.305 kb on - strand, within Dsui_1882 at 1980.404 kb on - strand, within Dsui_1882 at 1980.585 kb on + strand, within Dsui_1882 at 1980.585 kb on + strand, within Dsui_1882 at 1980.647 kb on - strand at 1980.702 kb on + strand at 1980.883 kb on - strand at 1980.889 kb on - strand at 1980.973 kb on + strand, within Dsui_1883 at 1981.021 kb on + strand, within Dsui_1883 at 1981.021 kb on + strand, within Dsui_1883 at 1981.120 kb on - strand, within Dsui_1883 at 1981.147 kb on - strand, within Dsui_1883 at 1981.160 kb on + strand, within Dsui_1883 at 1981.362 kb on - strand, within Dsui_1883 at 1981.362 kb on - strand, within Dsui_1883 at 1981.556 kb on - strand, within Dsui_1883 at 1981.885 kb on + strand, within Dsui_1883 at 1981.896 kb on - strand at 1981.921 kb on - strand at 1981.965 kb on + strand, within Dsui_1883 at 1982.086 kb on + strand, within Dsui_1883 at 1982.178 kb on - strand, within Dsui_1883 at 1982.178 kb on - strand, within Dsui_1883 at 1982.212 kb on + strand, within Dsui_1883 at 1982.380 kb on - strand, within Dsui_1883 at 1982.454 kb on - strand at 1982.500 kb on + strand at 1982.568 kb on + strand at 1982.568 kb on + strand at 1982.576 kb on - strand at 1982.849 kb on - strand, within Dsui_1884 at 1983.040 kb on - strand, within Dsui_1884 at 1983.136 kb on + strand, within Dsui_1884 at 1983.293 kb on + strand at 1983.421 kb on + strand, within Dsui_1884 at 1983.435 kb on - strand, within Dsui_1884 at 1983.634 kb on - strand, within Dsui_1884
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM remove 1,979,782 + Dsui_1881 0.85 +0.4 1,979,790 - Dsui_1881 0.86 +0.1 1,979,897 - +0.1 1,979,911 + +0.5 1,979,919 - +0.1 1,979,984 - +0.1 1,980,000 - -0.6 1,980,032 - +0.4 1,980,062 - -0.5 1,980,174 - +0.1 1,980,268 + Dsui_1882 0.26 -0.2 1,980,302 + Dsui_1882 0.33 +0.6 1,980,305 - Dsui_1882 0.33 -0.3 1,980,404 - Dsui_1882 0.53 -0.2 1,980,585 + Dsui_1882 0.89 +0.3 1,980,585 + Dsui_1882 0.89 +0.4 1,980,647 - -0.3 1,980,702 + +0.2 1,980,883 - +0.8 1,980,889 - +2.8 1,980,973 + Dsui_1883 0.12 +0.0 1,981,021 + Dsui_1883 0.15 +0.6 1,981,021 + Dsui_1883 0.15 +0.5 1,981,120 - Dsui_1883 0.20 +0.9 1,981,147 - Dsui_1883 0.21 +1.2 1,981,160 + Dsui_1883 0.22 +0.5 1,981,362 - Dsui_1883 0.32 +1.6 1,981,362 - Dsui_1883 0.32 -0.8 1,981,556 - Dsui_1883 0.42 +0.3 1,981,885 + Dsui_1883 0.59 +0.6 1,981,896 - +0.5 1,981,921 - +2.2 1,981,965 + Dsui_1883 0.64 +0.7 1,982,086 + Dsui_1883 0.70 +1.3 1,982,178 - Dsui_1883 0.75 +0.5 1,982,178 - Dsui_1883 0.75 +0.8 1,982,212 + Dsui_1883 0.76 -1.7 1,982,380 - Dsui_1883 0.85 -0.3 1,982,454 - +0.4 1,982,500 + +0.2 1,982,568 + +0.1 1,982,568 + +0.7 1,982,576 - -0.3 1,982,849 - Dsui_1884 0.16 -0.1 1,983,040 - Dsui_1884 0.32 +0.3 1,983,136 + Dsui_1884 0.41 +0.3 1,983,293 + +1.8 1,983,421 + Dsui_1884 0.65 +0.0 1,983,435 - Dsui_1884 0.66 +0.0 1,983,634 - Dsui_1884 0.83 +0.4
Or see this region's nucleotide sequence