Strain Fitness in Dechlorosoma suillum PS around Dsui_1873

Experiment: rich media with hydrogen peroxide 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1872 and Dsui_1873 are separated by 170 nucleotidesDsui_1873 and Dsui_1874 overlap by 1 nucleotidesDsui_1874 and Dsui_1875 are separated by 66 nucleotidesDsui_1875 and Dsui_1876 are separated by 146 nucleotides Dsui_1872: Dsui_1872 - RND family efflux transporter, MFP subunit, at 1,971,002 to 1,972,261 _1872 Dsui_1873: Dsui_1873 - transcriptional regulator, at 1,972,432 to 1,973,046 _1873 Dsui_1874: Dsui_1874 - hypothetical protein, at 1,973,046 to 1,973,378 _1874 Dsui_1875: Dsui_1875 - hypothetical protein, at 1,973,445 to 1,973,618 _1875 Dsui_1876: Dsui_1876 - transcriptional regulator, at 1,973,765 to 1,974,349 _1876 Position (kb) 1972 1973 1974Strain fitness (log2 ratio) -1 0 1 2 3at 1971.537 kb on - strand, within Dsui_1872at 1971.585 kb on + strand, within Dsui_1872at 1971.593 kb on - strandat 1971.593 kb on - strand, within Dsui_1872at 1971.615 kb on - strand, within Dsui_1872at 1971.665 kb on - strand, within Dsui_1872at 1971.669 kb on - strand, within Dsui_1872at 1971.677 kb on - strand, within Dsui_1872at 1971.679 kb on - strand, within Dsui_1872at 1971.759 kb on - strand, within Dsui_1872at 1971.765 kb on - strand, within Dsui_1872at 1971.783 kb on + strand, within Dsui_1872at 1971.797 kb on + strand, within Dsui_1872at 1971.914 kb on - strand, within Dsui_1872at 1971.914 kb on - strand, within Dsui_1872at 1971.928 kb on + strandat 1971.983 kb on - strand, within Dsui_1872at 1972.064 kb on - strand, within Dsui_1872at 1972.075 kb on + strand, within Dsui_1872at 1972.075 kb on + strandat 1972.089 kb on + strandat 1972.127 kb on - strand, within Dsui_1872at 1972.130 kb on + strand, within Dsui_1872at 1972.130 kb on + strandat 1972.153 kb on - strandat 1972.234 kb on - strandat 1972.239 kb on + strandat 1972.390 kb on - strandat 1972.548 kb on + strand, within Dsui_1873at 1972.556 kb on + strand, within Dsui_1873at 1972.595 kb on + strand, within Dsui_1873at 1972.597 kb on + strand, within Dsui_1873at 1972.739 kb on + strand, within Dsui_1873at 1972.859 kb on + strand, within Dsui_1873at 1972.925 kb on + strand, within Dsui_1873at 1973.055 kb on + strandat 1973.167 kb on + strand, within Dsui_1874at 1973.167 kb on + strand, within Dsui_1874at 1973.173 kb on + strand, within Dsui_1874at 1973.181 kb on - strand, within Dsui_1874at 1973.233 kb on - strand, within Dsui_1874at 1973.270 kb on - strand, within Dsui_1874at 1973.334 kb on - strand, within Dsui_1874at 1973.356 kb on + strandat 1973.438 kb on + strandat 1973.526 kb on - strand, within Dsui_1875at 1973.545 kb on - strand, within Dsui_1875at 1973.581 kb on - strand, within Dsui_1875at 1973.601 kb on + strandat 1973.601 kb on + strandat 1973.645 kb on - strandat 1973.828 kb on + strand, within Dsui_1876at 1973.892 kb on + strand, within Dsui_1876

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM
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1,971,537 - Dsui_1872 0.42 -0.9
1,971,585 + Dsui_1872 0.46 +2.3
1,971,593 - -0.2
1,971,593 - Dsui_1872 0.47 +0.2
1,971,615 - Dsui_1872 0.49 -1.7
1,971,665 - Dsui_1872 0.53 +0.3
1,971,669 - Dsui_1872 0.53 +0.4
1,971,677 - Dsui_1872 0.54 -0.0
1,971,679 - Dsui_1872 0.54 -0.0
1,971,759 - Dsui_1872 0.60 -0.5
1,971,765 - Dsui_1872 0.61 +0.5
1,971,783 + Dsui_1872 0.62 -0.5
1,971,797 + Dsui_1872 0.63 -1.6
1,971,914 - Dsui_1872 0.72 -0.7
1,971,914 - Dsui_1872 0.72 +0.9
1,971,928 + -0.2
1,971,983 - Dsui_1872 0.78 +0.4
1,972,064 - Dsui_1872 0.84 +0.8
1,972,075 + Dsui_1872 0.85 +0.0
1,972,075 + +2.8
1,972,089 + -1.0
1,972,127 - Dsui_1872 0.89 +0.0
1,972,130 + Dsui_1872 0.90 +1.2
1,972,130 + +0.4
1,972,153 - +1.8
1,972,234 - -0.1
1,972,239 + -1.0
1,972,390 - +1.8
1,972,548 + Dsui_1873 0.19 +2.5
1,972,556 + Dsui_1873 0.20 +0.3
1,972,595 + Dsui_1873 0.27 +0.1
1,972,597 + Dsui_1873 0.27 +0.6
1,972,739 + Dsui_1873 0.50 -1.0
1,972,859 + Dsui_1873 0.69 +0.6
1,972,925 + Dsui_1873 0.80 +0.5
1,973,055 + +0.1
1,973,167 + Dsui_1874 0.36 +0.5
1,973,167 + Dsui_1874 0.36 -0.7
1,973,173 + Dsui_1874 0.38 -0.3
1,973,181 - Dsui_1874 0.41 +0.8
1,973,233 - Dsui_1874 0.56 +1.5
1,973,270 - Dsui_1874 0.67 +0.5
1,973,334 - Dsui_1874 0.86 -0.8
1,973,356 + +0.3
1,973,438 + +1.8
1,973,526 - Dsui_1875 0.47 +2.8
1,973,545 - Dsui_1875 0.57 +1.1
1,973,581 - Dsui_1875 0.78 +0.6
1,973,601 + +1.0
1,973,601 + +0.3
1,973,645 - +0.8
1,973,828 + Dsui_1876 0.11 +1.0
1,973,892 + Dsui_1876 0.22 +0.4

Or see this region's nucleotide sequence