Experiment: rich media with hydrogen peroxide 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1796 and Dsui_1797 are separated by 77 nucleotides Dsui_1797 and Dsui_1798 are separated by 29 nucleotides
Dsui_1796: Dsui_1796 - phage/plasmid-related protein TIGR03299, at 1,895,646 to 1,896,614
_1796
Dsui_1797: Dsui_1797 - putative phage-type endonuclease, at 1,896,692 to 1,897,264
_1797
Dsui_1798: Dsui_1798 - DNA replication protein, at 1,897,294 to 1,898,028
_1798
Position (kb)
1896
1897
1898 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1895.695 kb on - strand at 1895.754 kb on + strand, within Dsui_1796 at 1895.762 kb on - strand, within Dsui_1796 at 1895.787 kb on - strand at 1895.812 kb on - strand, within Dsui_1796 at 1895.875 kb on + strand at 1895.897 kb on - strand, within Dsui_1796 at 1895.905 kb on + strand, within Dsui_1796 at 1895.914 kb on - strand, within Dsui_1796 at 1895.914 kb on - strand, within Dsui_1796 at 1895.922 kb on + strand at 1895.922 kb on + strand, within Dsui_1796 at 1895.935 kb on + strand, within Dsui_1796 at 1896.022 kb on - strand, within Dsui_1796 at 1896.037 kb on - strand, within Dsui_1796 at 1896.046 kb on + strand, within Dsui_1796 at 1896.056 kb on + strand at 1896.056 kb on + strand, within Dsui_1796 at 1896.056 kb on + strand, within Dsui_1796 at 1896.064 kb on - strand, within Dsui_1796 at 1896.064 kb on - strand, within Dsui_1796 at 1896.064 kb on - strand, within Dsui_1796 at 1896.064 kb on - strand, within Dsui_1796 at 1896.064 kb on - strand, within Dsui_1796 at 1896.086 kb on - strand, within Dsui_1796 at 1896.099 kb on - strand, within Dsui_1796 at 1896.132 kb on - strand, within Dsui_1796 at 1896.147 kb on + strand, within Dsui_1796 at 1896.147 kb on + strand, within Dsui_1796 at 1896.155 kb on - strand, within Dsui_1796 at 1896.162 kb on - strand, within Dsui_1796 at 1896.164 kb on + strand, within Dsui_1796 at 1896.169 kb on + strand, within Dsui_1796 at 1896.169 kb on + strand, within Dsui_1796 at 1896.177 kb on - strand, within Dsui_1796 at 1896.238 kb on + strand, within Dsui_1796 at 1896.261 kb on + strand, within Dsui_1796 at 1896.262 kb on + strand at 1896.281 kb on + strand, within Dsui_1796 at 1896.336 kb on - strand, within Dsui_1796 at 1896.404 kb on + strand, within Dsui_1796 at 1896.422 kb on - strand, within Dsui_1796 at 1896.423 kb on + strand at 1896.484 kb on - strand at 1896.484 kb on - strand, within Dsui_1796 at 1896.587 kb on - strand at 1896.594 kb on + strand at 1896.600 kb on - strand at 1896.657 kb on - strand at 1896.669 kb on + strand at 1896.714 kb on - strand at 1896.722 kb on + strand at 1896.736 kb on - strand at 1896.774 kb on - strand, within Dsui_1797 at 1896.801 kb on + strand at 1896.825 kb on - strand at 1896.834 kb on + strand at 1896.842 kb on - strand, within Dsui_1797 at 1896.898 kb on + strand, within Dsui_1797 at 1896.906 kb on - strand, within Dsui_1797 at 1896.937 kb on + strand at 1896.947 kb on - strand, within Dsui_1797 at 1896.948 kb on + strand, within Dsui_1797 at 1896.983 kb on - strand, within Dsui_1797 at 1897.014 kb on - strand, within Dsui_1797 at 1897.042 kb on + strand at 1897.050 kb on - strand, within Dsui_1797 at 1897.099 kb on - strand, within Dsui_1797 at 1897.136 kb on - strand, within Dsui_1797 at 1897.233 kb on + strand at 1897.241 kb on - strand at 1897.266 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM remove 1,895,695 - -1.1 1,895,754 + Dsui_1796 0.11 +0.4 1,895,762 - Dsui_1796 0.12 -0.1 1,895,787 - +1.0 1,895,812 - Dsui_1796 0.17 -0.1 1,895,875 + +0.7 1,895,897 - Dsui_1796 0.26 +0.9 1,895,905 + Dsui_1796 0.27 -1.1 1,895,914 - Dsui_1796 0.28 -0.7 1,895,914 - Dsui_1796 0.28 +0.1 1,895,922 + +0.1 1,895,922 + Dsui_1796 0.28 +0.4 1,895,935 + Dsui_1796 0.30 -1.3 1,896,022 - Dsui_1796 0.39 +0.5 1,896,037 - Dsui_1796 0.40 -1.4 1,896,046 + Dsui_1796 0.41 -0.2 1,896,056 + +0.1 1,896,056 + Dsui_1796 0.42 -1.6 1,896,056 + Dsui_1796 0.42 -2.9 1,896,064 - Dsui_1796 0.43 -2.7 1,896,064 - Dsui_1796 0.43 +0.7 1,896,064 - Dsui_1796 0.43 -0.3 1,896,064 - Dsui_1796 0.43 -0.2 1,896,064 - Dsui_1796 0.43 -1.1 1,896,086 - Dsui_1796 0.45 +0.0 1,896,099 - Dsui_1796 0.47 +0.2 1,896,132 - Dsui_1796 0.50 -1.4 1,896,147 + Dsui_1796 0.52 +0.6 1,896,147 + Dsui_1796 0.52 -1.1 1,896,155 - Dsui_1796 0.53 -0.3 1,896,162 - Dsui_1796 0.53 -1.1 1,896,164 + Dsui_1796 0.53 +0.3 1,896,169 + Dsui_1796 0.54 -0.4 1,896,169 + Dsui_1796 0.54 +2.0 1,896,177 - Dsui_1796 0.55 -0.9 1,896,238 + Dsui_1796 0.61 -1.0 1,896,261 + Dsui_1796 0.63 +0.2 1,896,262 + -0.6 1,896,281 + Dsui_1796 0.66 +0.9 1,896,336 - Dsui_1796 0.71 -2.1 1,896,404 + Dsui_1796 0.78 +0.8 1,896,422 - Dsui_1796 0.80 -0.0 1,896,423 + +0.4 1,896,484 - +1.0 1,896,484 - Dsui_1796 0.86 +0.4 1,896,587 - -1.3 1,896,594 + -0.3 1,896,600 - +0.7 1,896,657 - -1.4 1,896,669 + +0.3 1,896,714 - -1.7 1,896,722 + -0.7 1,896,736 - -0.7 1,896,774 - Dsui_1797 0.14 +1.4 1,896,801 + +1.4 1,896,825 - +0.1 1,896,834 + +0.1 1,896,842 - Dsui_1797 0.26 -0.8 1,896,898 + Dsui_1797 0.36 -0.9 1,896,906 - Dsui_1797 0.37 -0.3 1,896,937 + +0.1 1,896,947 - Dsui_1797 0.45 -1.1 1,896,948 + Dsui_1797 0.45 -0.2 1,896,983 - Dsui_1797 0.51 -1.6 1,897,014 - Dsui_1797 0.56 -1.7 1,897,042 + -1.1 1,897,050 - Dsui_1797 0.62 +0.9 1,897,099 - Dsui_1797 0.71 -0.2 1,897,136 - Dsui_1797 0.77 -0.9 1,897,233 + +0.7 1,897,241 - -0.1 1,897,266 - -0.3
Or see this region's nucleotide sequence