Experiment: rich media with hydrogen peroxide 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1770 and Dsui_1771 are separated by 20 nucleotides Dsui_1771 and Dsui_1772 overlap by 4 nucleotides
Dsui_1770: Dsui_1770 - hypothetical protein, at 1,856,235 to 1,857,332
_1770
Dsui_1771: Dsui_1771 - hypothetical protein, at 1,857,353 to 1,858,123
_1771
Dsui_1772: Dsui_1772 - type I secretion system ABC transporter, PrtD family, at 1,858,120 to 1,859,859
_1772
Position (kb)
1857
1858
1859 Strain fitness (log2 ratio)
-2
-1
0
1 at 1856.406 kb on - strand, within Dsui_1770 at 1856.459 kb on - strand, within Dsui_1770 at 1856.527 kb on - strand, within Dsui_1770 at 1856.594 kb on + strand, within Dsui_1770 at 1856.765 kb on - strand, within Dsui_1770 at 1856.799 kb on + strand, within Dsui_1770 at 1856.901 kb on - strand, within Dsui_1770 at 1856.939 kb on - strand, within Dsui_1770 at 1856.969 kb on + strand, within Dsui_1770 at 1856.980 kb on + strand, within Dsui_1770 at 1856.993 kb on - strand, within Dsui_1770 at 1857.043 kb on - strand, within Dsui_1770 at 1857.080 kb on - strand, within Dsui_1770 at 1857.083 kb on + strand, within Dsui_1770 at 1857.091 kb on - strand, within Dsui_1770 at 1857.147 kb on - strand, within Dsui_1770 at 1857.147 kb on - strand, within Dsui_1770 at 1857.188 kb on + strand, within Dsui_1770 at 1857.276 kb on + strand at 1857.313 kb on + strand at 1857.363 kb on - strand at 1857.410 kb on - strand at 1857.410 kb on - strand at 1857.410 kb on - strand at 1857.410 kb on - strand at 1857.420 kb on - strand at 1857.460 kb on + strand, within Dsui_1771 at 1857.578 kb on + strand, within Dsui_1771 at 1857.580 kb on + strand, within Dsui_1771 at 1857.680 kb on + strand, within Dsui_1771 at 1857.701 kb on + strand, within Dsui_1771 at 1857.981 kb on - strand, within Dsui_1771 at 1858.011 kb on - strand, within Dsui_1771 at 1858.089 kb on + strand at 1858.094 kb on + strand at 1858.107 kb on - strand at 1858.142 kb on + strand at 1858.142 kb on + strand at 1858.263 kb on - strand at 1858.263 kb on - strand at 1858.347 kb on - strand, within Dsui_1772 at 1858.468 kb on - strand, within Dsui_1772 at 1858.473 kb on - strand at 1858.519 kb on - strand, within Dsui_1772 at 1858.566 kb on + strand, within Dsui_1772 at 1858.625 kb on - strand at 1858.634 kb on + strand, within Dsui_1772 at 1858.662 kb on - strand, within Dsui_1772 at 1858.840 kb on + strand, within Dsui_1772 at 1858.841 kb on + strand, within Dsui_1772 at 1858.846 kb on + strand, within Dsui_1772 at 1858.851 kb on + strand, within Dsui_1772 at 1858.923 kb on + strand, within Dsui_1772 at 1859.095 kb on - strand, within Dsui_1772
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM remove 1,856,406 - Dsui_1770 0.16 -0.3 1,856,459 - Dsui_1770 0.20 -1.3 1,856,527 - Dsui_1770 0.27 +0.1 1,856,594 + Dsui_1770 0.33 -0.1 1,856,765 - Dsui_1770 0.48 -0.7 1,856,799 + Dsui_1770 0.51 -0.0 1,856,901 - Dsui_1770 0.61 +0.7 1,856,939 - Dsui_1770 0.64 -0.7 1,856,969 + Dsui_1770 0.67 -0.2 1,856,980 + Dsui_1770 0.68 -0.0 1,856,993 - Dsui_1770 0.69 -0.5 1,857,043 - Dsui_1770 0.74 -1.0 1,857,080 - Dsui_1770 0.77 -0.3 1,857,083 + Dsui_1770 0.77 -0.4 1,857,091 - Dsui_1770 0.78 -0.8 1,857,147 - Dsui_1770 0.83 +1.1 1,857,147 - Dsui_1770 0.83 -0.2 1,857,188 + Dsui_1770 0.87 -0.3 1,857,276 + -0.3 1,857,313 + +0.1 1,857,363 - -0.3 1,857,410 - -1.5 1,857,410 - +1.4 1,857,410 - +0.0 1,857,410 - -0.4 1,857,420 - -0.5 1,857,460 + Dsui_1771 0.14 -0.5 1,857,578 + Dsui_1771 0.29 -0.1 1,857,580 + Dsui_1771 0.29 -1.0 1,857,680 + Dsui_1771 0.42 -0.7 1,857,701 + Dsui_1771 0.45 -0.6 1,857,981 - Dsui_1771 0.81 -0.7 1,858,011 - Dsui_1771 0.85 -1.0 1,858,089 + -0.0 1,858,094 + -0.2 1,858,107 - +0.7 1,858,142 + -0.4 1,858,142 + -0.0 1,858,263 - -1.4 1,858,263 - +0.0 1,858,347 - Dsui_1772 0.13 -2.3 1,858,468 - Dsui_1772 0.20 -0.2 1,858,473 - -0.0 1,858,519 - Dsui_1772 0.23 -0.9 1,858,566 + Dsui_1772 0.26 -0.1 1,858,625 - -0.3 1,858,634 + Dsui_1772 0.30 -0.7 1,858,662 - Dsui_1772 0.31 -0.6 1,858,840 + Dsui_1772 0.41 -0.5 1,858,841 + Dsui_1772 0.41 -0.2 1,858,846 + Dsui_1772 0.42 -0.1 1,858,851 + Dsui_1772 0.42 -0.6 1,858,923 + Dsui_1772 0.46 -0.4 1,859,095 - Dsui_1772 0.56 -0.6
Or see this region's nucleotide sequence