Strain Fitness in Dechlorosoma suillum PS around Dsui_1704

Experiment: rich media with hydrogen peroxide 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_1702 and Dsui_1703 are separated by 14 nucleotidesDsui_1703 and Dsui_1704 are separated by 275 nucleotidesDsui_1704 and Dsui_1705 are separated by 30 nucleotides Dsui_1702: Dsui_1702 - TonB family protein, at 1,789,314 to 1,790,039 _1702 Dsui_1703: Dsui_1703 - ADP-ribose pyrophosphatase, at 1,790,054 to 1,790,602 _1703 Dsui_1704: Dsui_1704 - flagellar motor stator protein MotA, at 1,790,878 to 1,791,735 _1704 Dsui_1705: Dsui_1705 - flagellar motor protein, at 1,791,766 to 1,792,713 _1705 Position (kb) 1790 1791 1792Strain fitness (log2 ratio) -1 0 1at 1789.885 kb on - strand, within Dsui_1702at 1789.973 kb on + strandat 1790.028 kb on - strandat 1790.083 kb on + strandat 1790.083 kb on + strandat 1790.083 kb on + strandat 1790.091 kb on - strandat 1790.091 kb on - strandat 1790.091 kb on - strandat 1790.093 kb on + strandat 1790.102 kb on + strandat 1790.106 kb on - strandat 1790.175 kb on - strand, within Dsui_1703at 1790.221 kb on + strand, within Dsui_1703at 1790.264 kb on + strand, within Dsui_1703at 1790.282 kb on - strand, within Dsui_1703at 1790.283 kb on - strand, within Dsui_1703at 1790.341 kb on - strand, within Dsui_1703at 1790.346 kb on - strand, within Dsui_1703at 1790.433 kb on - strand, within Dsui_1703at 1790.449 kb on - strand, within Dsui_1703at 1790.493 kb on + strand, within Dsui_1703at 1790.507 kb on - strand, within Dsui_1703at 1790.592 kb on + strandat 1790.595 kb on - strandat 1790.610 kb on + strandat 1790.610 kb on + strandat 1790.613 kb on + strandat 1790.616 kb on - strandat 1790.618 kb on - strandat 1790.679 kb on - strandat 1790.683 kb on + strandat 1790.685 kb on + strandat 1790.692 kb on - strandat 1790.778 kb on - strandat 1790.801 kb on + strandat 1790.854 kb on + strandat 1790.861 kb on + strandat 1790.863 kb on + strandat 1791.023 kb on + strand, within Dsui_1704at 1791.094 kb on - strand, within Dsui_1704at 1791.106 kb on - strandat 1791.254 kb on + strand, within Dsui_1704at 1791.273 kb on + strand, within Dsui_1704at 1791.285 kb on + strand, within Dsui_1704at 1791.293 kb on + strand, within Dsui_1704at 1791.359 kb on - strand, within Dsui_1704at 1791.451 kb on - strand, within Dsui_1704at 1791.456 kb on - strand, within Dsui_1704at 1791.550 kb on - strand, within Dsui_1704at 1791.582 kb on - strand, within Dsui_1704at 1791.719 kb on - strandat 1791.760 kb on + strandat 1791.768 kb on - strandat 1791.836 kb on - strandat 1792.011 kb on + strand, within Dsui_1705at 1792.033 kb on - strand, within Dsui_1705at 1792.033 kb on - strand, within Dsui_1705at 1792.033 kb on - strand, within Dsui_1705at 1792.056 kb on + strand, within Dsui_1705at 1792.218 kb on + strand, within Dsui_1705at 1792.257 kb on + strand, within Dsui_1705at 1792.290 kb on + strand, within Dsui_1705at 1792.290 kb on + strand, within Dsui_1705at 1792.298 kb on - strand, within Dsui_1705at 1792.464 kb on + strand, within Dsui_1705at 1792.483 kb on - strand, within Dsui_1705at 1792.483 kb on - strandat 1792.512 kb on + strand, within Dsui_1705at 1792.520 kb on - strand, within Dsui_1705at 1792.587 kb on - strand, within Dsui_1705at 1792.686 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM
remove
1,789,885 - Dsui_1702 0.79 -0.9
1,789,973 + +0.5
1,790,028 - +0.0
1,790,083 + +0.5
1,790,083 + +1.2
1,790,083 + -0.5
1,790,091 - +0.7
1,790,091 - -0.3
1,790,091 - -0.4
1,790,093 + -0.2
1,790,102 + +1.1
1,790,106 - +0.2
1,790,175 - Dsui_1703 0.22 -0.1
1,790,221 + Dsui_1703 0.30 +0.2
1,790,264 + Dsui_1703 0.38 -0.3
1,790,282 - Dsui_1703 0.42 -0.8
1,790,283 - Dsui_1703 0.42 -0.1
1,790,341 - Dsui_1703 0.52 +0.1
1,790,346 - Dsui_1703 0.53 +0.6
1,790,433 - Dsui_1703 0.69 -1.3
1,790,449 - Dsui_1703 0.72 +0.7
1,790,493 + Dsui_1703 0.80 +0.3
1,790,507 - Dsui_1703 0.83 +0.5
1,790,592 + -0.3
1,790,595 - +0.4
1,790,610 + -0.3
1,790,610 + -1.0
1,790,613 + +0.1
1,790,616 - +1.2
1,790,618 - +0.4
1,790,679 - +0.3
1,790,683 + -0.3
1,790,685 + +1.3
1,790,692 - +0.1
1,790,778 - +1.1
1,790,801 + +0.1
1,790,854 + +0.6
1,790,861 + +0.5
1,790,863 + -0.4
1,791,023 + Dsui_1704 0.17 +0.3
1,791,094 - Dsui_1704 0.25 +0.8
1,791,106 - +0.1
1,791,254 + Dsui_1704 0.44 +0.8
1,791,273 + Dsui_1704 0.46 +0.5
1,791,285 + Dsui_1704 0.47 +0.5
1,791,293 + Dsui_1704 0.48 -0.2
1,791,359 - Dsui_1704 0.56 +1.0
1,791,451 - Dsui_1704 0.67 +0.4
1,791,456 - Dsui_1704 0.67 +0.3
1,791,550 - Dsui_1704 0.78 +0.2
1,791,582 - Dsui_1704 0.82 +0.1
1,791,719 - +1.1
1,791,760 + +0.1
1,791,768 - -0.4
1,791,836 - -0.3
1,792,011 + Dsui_1705 0.26 -0.4
1,792,033 - Dsui_1705 0.28 -0.1
1,792,033 - Dsui_1705 0.28 +0.5
1,792,033 - Dsui_1705 0.28 +1.2
1,792,056 + Dsui_1705 0.31 +0.4
1,792,218 + Dsui_1705 0.48 -0.6
1,792,257 + Dsui_1705 0.52 -0.1
1,792,290 + Dsui_1705 0.55 +0.1
1,792,290 + Dsui_1705 0.55 +0.4
1,792,298 - Dsui_1705 0.56 +0.2
1,792,464 + Dsui_1705 0.74 +0.3
1,792,483 - Dsui_1705 0.76 -1.7
1,792,483 - +0.7
1,792,512 + Dsui_1705 0.79 +0.3
1,792,520 - Dsui_1705 0.80 +0.4
1,792,587 - Dsui_1705 0.87 +0.7
1,792,686 + +0.1

Or see this region's nucleotide sequence