Experiment: rich media with hydrogen peroxide 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1663 and Dsui_1664 are separated by 101 nucleotides Dsui_1664 and Dsui_1665 are separated by 33 nucleotides Dsui_1665 and Dsui_1666 overlap by 16 nucleotides
Dsui_1663: Dsui_1663 - ABC-type Co2+ transport system, periplasmic component, at 1,747,425 to 1,748,228
_1663
Dsui_1664: Dsui_1664 - putative periplasmic protein, at 1,748,330 to 1,748,854
_1664
Dsui_1665: Dsui_1665 - hypothetical protein, at 1,748,888 to 1,749,547
_1665
Dsui_1666: Dsui_1666 - putative iron-regulated protein, at 1,749,532 to 1,750,212
_1666
Position (kb)
1748
1749 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1747.642 kb on - strand, within Dsui_1663 at 1747.690 kb on + strand, within Dsui_1663 at 1747.845 kb on + strand at 1747.880 kb on - strand, within Dsui_1663 at 1747.892 kb on + strand, within Dsui_1663 at 1747.900 kb on - strand, within Dsui_1663 at 1747.939 kb on + strand, within Dsui_1663 at 1747.947 kb on - strand, within Dsui_1663 at 1748.093 kb on - strand, within Dsui_1663 at 1748.116 kb on + strand at 1748.116 kb on + strand at 1748.116 kb on + strand, within Dsui_1663 at 1748.276 kb on - strand at 1748.289 kb on + strand at 1748.290 kb on - strand at 1748.290 kb on - strand at 1748.290 kb on - strand at 1748.290 kb on - strand at 1748.328 kb on + strand at 1748.336 kb on - strand at 1748.341 kb on + strand at 1748.349 kb on - strand at 1748.371 kb on + strand at 1748.439 kb on - strand, within Dsui_1664 at 1748.439 kb on - strand, within Dsui_1664 at 1748.550 kb on - strand, within Dsui_1664 at 1748.564 kb on + strand, within Dsui_1664 at 1748.661 kb on + strand at 1748.735 kb on - strand, within Dsui_1664 at 1748.906 kb on + strand at 1748.935 kb on + strand at 1748.949 kb on - strand at 1749.069 kb on + strand, within Dsui_1665 at 1749.077 kb on - strand, within Dsui_1665 at 1749.154 kb on + strand, within Dsui_1665 at 1749.185 kb on - strand, within Dsui_1665 at 1749.358 kb on - strand, within Dsui_1665 at 1749.513 kb on + strand at 1749.530 kb on + strand at 1749.538 kb on - strand at 1749.538 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM remove 1,747,642 - Dsui_1663 0.27 -1.4 1,747,690 + Dsui_1663 0.33 +0.1 1,747,845 + +1.3 1,747,880 - Dsui_1663 0.57 -0.2 1,747,892 + Dsui_1663 0.58 +1.0 1,747,900 - Dsui_1663 0.59 +0.1 1,747,939 + Dsui_1663 0.64 -0.4 1,747,947 - Dsui_1663 0.65 +0.3 1,748,093 - Dsui_1663 0.83 -0.5 1,748,116 + +0.1 1,748,116 + +0.1 1,748,116 + Dsui_1663 0.86 -1.0 1,748,276 - -0.3 1,748,289 + -1.8 1,748,290 - +0.5 1,748,290 - +0.1 1,748,290 - -0.6 1,748,290 - +1.7 1,748,328 + +1.0 1,748,336 - +1.4 1,748,341 + -0.1 1,748,349 - -0.9 1,748,371 + +2.0 1,748,439 - Dsui_1664 0.21 +0.0 1,748,439 - Dsui_1664 0.21 -0.4 1,748,550 - Dsui_1664 0.42 +2.2 1,748,564 + Dsui_1664 0.45 +1.4 1,748,661 + +2.7 1,748,735 - Dsui_1664 0.77 +0.3 1,748,906 + -1.3 1,748,935 + -0.4 1,748,949 - -0.1 1,749,069 + Dsui_1665 0.27 -0.1 1,749,077 - Dsui_1665 0.29 +0.4 1,749,154 + Dsui_1665 0.40 +0.1 1,749,185 - Dsui_1665 0.45 -0.4 1,749,358 - Dsui_1665 0.71 -1.1 1,749,513 + +0.2 1,749,530 + +0.2 1,749,538 - +1.4 1,749,538 - +0.8
Or see this region's nucleotide sequence