Experiment: rich media with hydrogen peroxide 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1457 and Dsui_1458 are separated by 101 nucleotides Dsui_1458 and Dsui_1459 are separated by 1 nucleotides Dsui_1459 and Dsui_1460 are separated by 140 nucleotides
Dsui_1457: Dsui_1457 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 1,516,863 to 1,517,258
_1457
Dsui_1458: Dsui_1458 - phosphohistidine phosphatase SixA, at 1,517,360 to 1,517,851
_1458
Dsui_1459: Dsui_1459 - hypothetical protein, at 1,517,853 to 1,519,376
_1459
Dsui_1460: Dsui_1460 - cAMP-binding protein, at 1,519,517 to 1,520,209
_1460
Position (kb)
1517
1518
1519
1520 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1516.882 kb on + strand at 1516.887 kb on + strand at 1517.071 kb on + strand, within Dsui_1457 at 1517.164 kb on - strand at 1517.318 kb on + strand at 1517.386 kb on + strand at 1517.407 kb on + strand at 1517.424 kb on + strand, within Dsui_1458 at 1517.467 kb on - strand, within Dsui_1458 at 1517.490 kb on + strand, within Dsui_1458 at 1517.574 kb on + strand, within Dsui_1458 at 1517.584 kb on + strand, within Dsui_1458 at 1517.585 kb on + strand, within Dsui_1458 at 1517.635 kb on + strand, within Dsui_1458 at 1517.668 kb on + strand, within Dsui_1458 at 1517.676 kb on - strand, within Dsui_1458 at 1517.691 kb on - strand, within Dsui_1458 at 1517.704 kb on + strand, within Dsui_1458 at 1517.928 kb on - strand at 1517.991 kb on - strand at 1518.337 kb on - strand, within Dsui_1459 at 1518.457 kb on - strand, within Dsui_1459 at 1518.560 kb on - strand, within Dsui_1459 at 1518.651 kb on + strand, within Dsui_1459 at 1518.689 kb on - strand, within Dsui_1459 at 1518.769 kb on + strand, within Dsui_1459 at 1518.777 kb on - strand, within Dsui_1459 at 1518.833 kb on + strand, within Dsui_1459 at 1518.953 kb on + strand, within Dsui_1459 at 1518.954 kb on + strand at 1519.019 kb on - strand, within Dsui_1459 at 1519.119 kb on - strand, within Dsui_1459 at 1519.219 kb on + strand, within Dsui_1459 at 1519.227 kb on - strand at 1519.238 kb on + strand at 1519.244 kb on + strand at 1519.375 kb on + strand at 1519.515 kb on + strand at 1519.530 kb on - strand at 1519.636 kb on + strand, within Dsui_1460 at 1519.679 kb on - strand, within Dsui_1460 at 1519.764 kb on + strand at 1519.770 kb on - strand, within Dsui_1460 at 1519.770 kb on - strand, within Dsui_1460 at 1519.800 kb on - strand, within Dsui_1460 at 1519.869 kb on + strand, within Dsui_1460 at 1519.888 kb on - strand, within Dsui_1460 at 1519.903 kb on + strand, within Dsui_1460 at 1519.907 kb on - strand, within Dsui_1460 at 1519.920 kb on + strand, within Dsui_1460 at 1519.926 kb on + strand at 1519.928 kb on - strand, within Dsui_1460 at 1519.940 kb on + strand at 1519.948 kb on - strand, within Dsui_1460 at 1519.948 kb on - strand, within Dsui_1460 at 1519.959 kb on + strand, within Dsui_1460 at 1519.963 kb on + strand at 1519.966 kb on - strand, within Dsui_1460 at 1519.966 kb on - strand, within Dsui_1460 at 1519.966 kb on - strand, within Dsui_1460 at 1519.967 kb on - strand, within Dsui_1460 at 1519.997 kb on + strand, within Dsui_1460 at 1520.005 kb on - strand, within Dsui_1460 at 1520.027 kb on - strand, within Dsui_1460 at 1520.044 kb on + strand, within Dsui_1460 at 1520.252 kb on + strand at 1520.258 kb on - strand at 1520.258 kb on - strand at 1520.273 kb on + strand at 1520.363 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM remove 1,516,882 + -0.1 1,516,887 + -1.6 1,517,071 + Dsui_1457 0.53 +0.0 1,517,164 - +3.3 1,517,318 + -0.6 1,517,386 + +0.3 1,517,407 + -0.4 1,517,424 + Dsui_1458 0.13 +0.5 1,517,467 - Dsui_1458 0.22 -0.2 1,517,490 + Dsui_1458 0.26 +1.5 1,517,574 + Dsui_1458 0.43 +0.1 1,517,584 + Dsui_1458 0.46 +0.4 1,517,585 + Dsui_1458 0.46 -0.9 1,517,635 + Dsui_1458 0.56 +1.4 1,517,668 + Dsui_1458 0.63 +1.1 1,517,676 - Dsui_1458 0.64 -1.8 1,517,691 - Dsui_1458 0.67 +1.5 1,517,704 + Dsui_1458 0.70 +0.8 1,517,928 - -0.6 1,517,991 - -2.1 1,518,337 - Dsui_1459 0.32 +0.1 1,518,457 - Dsui_1459 0.40 -1.1 1,518,560 - Dsui_1459 0.46 +0.5 1,518,651 + Dsui_1459 0.52 +0.9 1,518,689 - Dsui_1459 0.55 -0.2 1,518,769 + Dsui_1459 0.60 -1.0 1,518,777 - Dsui_1459 0.61 -0.9 1,518,833 + Dsui_1459 0.64 +0.3 1,518,953 + Dsui_1459 0.72 -0.9 1,518,954 + +0.7 1,519,019 - Dsui_1459 0.77 -0.5 1,519,119 - Dsui_1459 0.83 +0.7 1,519,219 + Dsui_1459 0.90 -1.8 1,519,227 - +0.1 1,519,238 + -0.7 1,519,244 + +1.1 1,519,375 + -0.0 1,519,515 + +0.3 1,519,530 - -0.4 1,519,636 + Dsui_1460 0.17 -0.1 1,519,679 - Dsui_1460 0.23 +0.7 1,519,764 + +0.7 1,519,770 - Dsui_1460 0.37 -1.1 1,519,770 - Dsui_1460 0.37 +0.1 1,519,800 - Dsui_1460 0.41 +0.1 1,519,869 + Dsui_1460 0.51 +1.4 1,519,888 - Dsui_1460 0.54 +0.2 1,519,903 + Dsui_1460 0.56 +0.9 1,519,907 - Dsui_1460 0.56 +0.4 1,519,920 + Dsui_1460 0.58 +0.4 1,519,926 + +0.7 1,519,928 - Dsui_1460 0.59 +0.5 1,519,940 + +0.4 1,519,948 - Dsui_1460 0.62 -1.8 1,519,948 - Dsui_1460 0.62 -0.5 1,519,959 + Dsui_1460 0.64 +0.0 1,519,963 + +0.9 1,519,966 - Dsui_1460 0.65 +0.4 1,519,966 - Dsui_1460 0.65 +0.3 1,519,966 - Dsui_1460 0.65 +0.0 1,519,967 - Dsui_1460 0.65 +0.4 1,519,997 + Dsui_1460 0.69 +0.1 1,520,005 - Dsui_1460 0.70 +0.0 1,520,027 - Dsui_1460 0.74 +0.2 1,520,044 + Dsui_1460 0.76 +0.9 1,520,252 + -0.3 1,520,258 - -0.4 1,520,258 - +1.7 1,520,273 + +2.7 1,520,363 - -0.3
Or see this region's nucleotide sequence