Experiment: rich media with hydrogen peroxide 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1446 and Dsui_1447 are separated by 212 nucleotides Dsui_1447 and Dsui_1448 are separated by 2 nucleotides Dsui_1448 and Dsui_1449 are separated by 233 nucleotides
Dsui_1446: Dsui_1446 - succinyl-CoA synthetase, alpha subunit, at 1,501,464 to 1,502,360
_1446
Dsui_1447: Dsui_1447 - integral membrane protein, YjbE family, at 1,502,573 to 1,503,274
_1447
Dsui_1448: Dsui_1448 - putative ornithine cyclodeaminase, mu-crystallin, at 1,503,277 to 1,504,248
_1448
Dsui_1449: Dsui_1449 - protein kinase family protein, at 1,504,482 to 1,506,998
_1449
Position (kb)
1503
1504
1505 Strain fitness (log2 ratio)
-2
-1
0
1 at 1502.502 kb on - strand at 1502.523 kb on - strand at 1502.540 kb on + strand at 1502.628 kb on - strand at 1502.686 kb on + strand, within Dsui_1447 at 1502.744 kb on - strand, within Dsui_1447 at 1502.761 kb on - strand, within Dsui_1447 at 1502.793 kb on + strand, within Dsui_1447 at 1502.898 kb on - strand, within Dsui_1447 at 1502.898 kb on - strand, within Dsui_1447 at 1503.400 kb on + strand, within Dsui_1448 at 1503.430 kb on + strand, within Dsui_1448 at 1503.438 kb on - strand at 1503.492 kb on - strand, within Dsui_1448 at 1503.558 kb on - strand at 1503.761 kb on - strand, within Dsui_1448 at 1503.783 kb on + strand, within Dsui_1448 at 1503.847 kb on - strand, within Dsui_1448 at 1503.904 kb on - strand, within Dsui_1448 at 1503.910 kb on + strand, within Dsui_1448 at 1504.012 kb on + strand, within Dsui_1448 at 1504.187 kb on + strand at 1504.219 kb on - strand at 1504.337 kb on + strand at 1504.343 kb on - strand at 1504.343 kb on - strand at 1504.451 kb on + strand at 1504.492 kb on - strand at 1504.499 kb on + strand at 1504.618 kb on + strand at 1504.618 kb on + strand at 1504.742 kb on + strand, within Dsui_1449 at 1504.772 kb on - strand, within Dsui_1449 at 1504.794 kb on + strand, within Dsui_1449 at 1504.916 kb on - strand, within Dsui_1449 at 1505.044 kb on + strand, within Dsui_1449 at 1505.125 kb on - strand, within Dsui_1449 at 1505.128 kb on + strand, within Dsui_1449 at 1505.160 kb on + strand, within Dsui_1449
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM remove 1,502,502 - +0.7 1,502,523 - -1.8 1,502,540 + -0.1 1,502,628 - -0.1 1,502,686 + Dsui_1447 0.16 -1.0 1,502,744 - Dsui_1447 0.24 -0.3 1,502,761 - Dsui_1447 0.27 -0.2 1,502,793 + Dsui_1447 0.31 +0.0 1,502,898 - Dsui_1447 0.46 -0.0 1,502,898 - Dsui_1447 0.46 +0.0 1,503,400 + Dsui_1448 0.13 -0.0 1,503,430 + Dsui_1448 0.16 +0.4 1,503,438 - +0.9 1,503,492 - Dsui_1448 0.22 -0.6 1,503,558 - -0.3 1,503,761 - Dsui_1448 0.50 -0.2 1,503,783 + Dsui_1448 0.52 -2.0 1,503,847 - Dsui_1448 0.59 +0.4 1,503,904 - Dsui_1448 0.65 -0.2 1,503,910 + Dsui_1448 0.65 -0.4 1,504,012 + Dsui_1448 0.76 +0.0 1,504,187 + -0.4 1,504,219 - +0.3 1,504,337 + +0.7 1,504,343 - -0.6 1,504,343 - +0.2 1,504,451 + -1.3 1,504,492 - +1.4 1,504,499 + -0.2 1,504,618 + -0.1 1,504,618 + +0.6 1,504,742 + Dsui_1449 0.10 +0.9 1,504,772 - Dsui_1449 0.12 -0.1 1,504,794 + Dsui_1449 0.12 -0.1 1,504,916 - Dsui_1449 0.17 +0.6 1,505,044 + Dsui_1449 0.22 +0.1 1,505,125 - Dsui_1449 0.26 -1.3 1,505,128 + Dsui_1449 0.26 +0.1 1,505,160 + Dsui_1449 0.27 +0.6
Or see this region's nucleotide sequence