Experiment: rich media with hydrogen peroxide 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1230 and Dsui_1231 are separated by 0 nucleotides Dsui_1231 and Dsui_1232 are separated by 76 nucleotides Dsui_1232 and Dsui_1233 are separated by 160 nucleotides
Dsui_1230: Dsui_1230 - TRAP-type uncharacterized transport system, periplasmic component, at 1,287,730 to 1,289,085
_1230
Dsui_1231: Dsui_1231 - ATPase involved in chromosome partitioning, at 1,289,086 to 1,289,709
_1231
Dsui_1232: Dsui_1232 - TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component, at 1,289,786 to 1,290,874
_1232
Dsui_1233: Dsui_1233 - TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component, at 1,291,035 to 1,292,126
_1233
Position (kb)
1289
1290
1291 Strain fitness (log2 ratio)
-1
0
1
2 at 1288.901 kb on + strand, within Dsui_1230 at 1288.954 kb on + strand at 1288.986 kb on - strand at 1288.988 kb on + strand at 1288.998 kb on + strand at 1288.998 kb on + strand at 1288.998 kb on + strand at 1288.998 kb on + strand at 1288.998 kb on + strand at 1288.998 kb on + strand at 1288.998 kb on + strand at 1288.998 kb on + strand at 1289.000 kb on + strand at 1289.006 kb on - strand at 1289.006 kb on - strand at 1289.006 kb on - strand at 1289.006 kb on - strand at 1289.047 kb on - strand at 1289.129 kb on + strand at 1289.134 kb on + strand at 1289.195 kb on + strand, within Dsui_1231 at 1289.277 kb on - strand, within Dsui_1231 at 1289.353 kb on + strand, within Dsui_1231 at 1289.361 kb on - strand, within Dsui_1231 at 1289.361 kb on - strand, within Dsui_1231 at 1289.366 kb on + strand, within Dsui_1231 at 1289.381 kb on + strand, within Dsui_1231 at 1289.384 kb on - strand, within Dsui_1231 at 1289.474 kb on + strand, within Dsui_1231 at 1289.477 kb on - strand, within Dsui_1231 at 1289.507 kb on - strand, within Dsui_1231 at 1289.632 kb on - strand, within Dsui_1231 at 1289.679 kb on + strand at 1289.679 kb on + strand at 1289.874 kb on + strand at 1289.882 kb on - strand at 1289.985 kb on - strand, within Dsui_1232 at 1289.993 kb on - strand, within Dsui_1232 at 1290.138 kb on + strand, within Dsui_1232 at 1290.141 kb on - strand, within Dsui_1232 at 1290.149 kb on - strand, within Dsui_1232 at 1290.156 kb on - strand, within Dsui_1232 at 1290.165 kb on - strand, within Dsui_1232 at 1290.181 kb on - strand, within Dsui_1232 at 1290.183 kb on + strand, within Dsui_1232 at 1290.297 kb on + strand, within Dsui_1232 at 1290.328 kb on + strand, within Dsui_1232 at 1290.511 kb on + strand, within Dsui_1232 at 1290.556 kb on - strand, within Dsui_1232 at 1290.564 kb on + strand, within Dsui_1232 at 1290.766 kb on - strand at 1290.780 kb on + strand at 1290.918 kb on - strand at 1291.010 kb on + strand at 1291.010 kb on + strand at 1291.021 kb on + strand at 1291.079 kb on + strand at 1291.123 kb on + strand at 1291.123 kb on + strand at 1291.123 kb on + strand at 1291.131 kb on - strand at 1291.131 kb on - strand at 1291.234 kb on + strand, within Dsui_1233 at 1291.234 kb on + strand, within Dsui_1233 at 1291.373 kb on + strand, within Dsui_1233 at 1291.381 kb on - strand, within Dsui_1233 at 1291.381 kb on - strand, within Dsui_1233 at 1291.386 kb on + strand, within Dsui_1233 at 1291.441 kb on - strand, within Dsui_1233 at 1291.510 kb on + strand, within Dsui_1233 at 1291.704 kb on + strand, within Dsui_1233 at 1291.716 kb on + strand, within Dsui_1233 at 1291.775 kb on + strand, within Dsui_1233 at 1291.793 kb on - strand, within Dsui_1233 at 1291.797 kb on + strand at 1291.798 kb on + strand, within Dsui_1233 at 1291.806 kb on - strand, within Dsui_1233 at 1291.806 kb on - strand, within Dsui_1233
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM remove 1,288,901 + Dsui_1230 0.86 +0.1 1,288,954 + -0.6 1,288,986 - -0.2 1,288,988 + +0.3 1,288,998 + -0.3 1,288,998 + +0.0 1,288,998 + +0.8 1,288,998 + +0.5 1,288,998 + +0.0 1,288,998 + +0.1 1,288,998 + +0.1 1,288,998 + +0.0 1,289,000 + +2.3 1,289,006 - -0.4 1,289,006 - -0.4 1,289,006 - -0.0 1,289,006 - +0.5 1,289,047 - +1.0 1,289,129 + +0.2 1,289,134 + +0.4 1,289,195 + Dsui_1231 0.17 +0.3 1,289,277 - Dsui_1231 0.31 +0.5 1,289,353 + Dsui_1231 0.43 -0.0 1,289,361 - Dsui_1231 0.44 -0.5 1,289,361 - Dsui_1231 0.44 -0.0 1,289,366 + Dsui_1231 0.45 +0.4 1,289,381 + Dsui_1231 0.47 +0.0 1,289,384 - Dsui_1231 0.48 -0.4 1,289,474 + Dsui_1231 0.62 +0.1 1,289,477 - Dsui_1231 0.63 +0.1 1,289,507 - Dsui_1231 0.67 +0.5 1,289,632 - Dsui_1231 0.88 +0.2 1,289,679 + +0.2 1,289,679 + +0.2 1,289,874 + +0.4 1,289,882 - +0.1 1,289,985 - Dsui_1232 0.18 +0.6 1,289,993 - Dsui_1232 0.19 +0.0 1,290,138 + Dsui_1232 0.32 +0.0 1,290,141 - Dsui_1232 0.33 +0.2 1,290,149 - Dsui_1232 0.33 +1.7 1,290,156 - Dsui_1232 0.34 -0.6 1,290,165 - Dsui_1232 0.35 +0.5 1,290,181 - Dsui_1232 0.36 +0.7 1,290,183 + Dsui_1232 0.36 +0.4 1,290,297 + Dsui_1232 0.47 +0.7 1,290,328 + Dsui_1232 0.50 +0.5 1,290,511 + Dsui_1232 0.67 +0.7 1,290,556 - Dsui_1232 0.71 +0.2 1,290,564 + Dsui_1232 0.71 +0.1 1,290,766 - +0.1 1,290,780 + -0.4 1,290,918 - -0.7 1,291,010 + -0.2 1,291,010 + +0.1 1,291,021 + -0.7 1,291,079 + -1.5 1,291,123 + -0.2 1,291,123 + -0.2 1,291,123 + -1.2 1,291,131 - -0.0 1,291,131 - -0.1 1,291,234 + Dsui_1233 0.18 +0.4 1,291,234 + Dsui_1233 0.18 +0.1 1,291,373 + Dsui_1233 0.31 +0.9 1,291,381 - Dsui_1233 0.32 -0.2 1,291,381 - Dsui_1233 0.32 -0.7 1,291,386 + Dsui_1233 0.32 -0.1 1,291,441 - Dsui_1233 0.37 -0.2 1,291,510 + Dsui_1233 0.43 +0.4 1,291,704 + Dsui_1233 0.61 +0.1 1,291,716 + Dsui_1233 0.62 +0.1 1,291,775 + Dsui_1233 0.68 +0.3 1,291,793 - Dsui_1233 0.69 -0.2 1,291,797 + -1.3 1,291,798 + Dsui_1233 0.70 +0.4 1,291,806 - Dsui_1233 0.71 +0.8 1,291,806 - Dsui_1233 0.71 -0.4
Or see this region's nucleotide sequence