Experiment: rich media with hydrogen peroxide 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0951 and Dsui_0952 are separated by 126 nucleotides Dsui_0952 and Dsui_0953 are separated by 94 nucleotides Dsui_0953 and Dsui_0954 are separated by 13 nucleotides
Dsui_0951: Dsui_0951 - nucleoside-diphosphate-sugar epimerase, at 976,773 to 977,732
_0951
Dsui_0952: Dsui_0952 - chemotaxis protein, at 977,859 to 978,482
_0952
Dsui_0953: Dsui_0953 - ADP-ribosyl-(dinitrogen reductase) hydrolase, at 978,577 to 979,500
_0953
Dsui_0954: Dsui_0954 - Dinitrogenase reductase ADP-ribosyltransferase (DRAT), at 979,514 to 980,365
_0954
Position (kb)
978
979
980 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 977.590 kb on + strand, within Dsui_0951 at 977.590 kb on + strand, within Dsui_0951 at 977.598 kb on - strand, within Dsui_0951 at 977.632 kb on - strand, within Dsui_0951 at 977.666 kb on + strand at 977.666 kb on + strand at 977.672 kb on + strand at 977.676 kb on + strand at 977.684 kb on - strand at 977.695 kb on + strand at 977.752 kb on + strand at 977.850 kb on - strand at 977.865 kb on - strand at 977.889 kb on - strand at 977.942 kb on - strand, within Dsui_0952 at 977.962 kb on + strand, within Dsui_0952 at 978.105 kb on + strand, within Dsui_0952 at 978.143 kb on + strand at 978.143 kb on + strand, within Dsui_0952 at 978.151 kb on - strand, within Dsui_0952 at 978.156 kb on - strand, within Dsui_0952 at 978.165 kb on + strand, within Dsui_0952 at 978.172 kb on - strand, within Dsui_0952 at 978.316 kb on + strand at 978.316 kb on + strand at 978.316 kb on + strand, within Dsui_0952 at 978.349 kb on - strand, within Dsui_0952 at 978.419 kb on + strand, within Dsui_0952 at 978.419 kb on + strand at 978.427 kb on - strand at 978.463 kb on - strand at 978.499 kb on - strand at 978.728 kb on - strand, within Dsui_0953 at 978.754 kb on - strand, within Dsui_0953 at 978.831 kb on + strand, within Dsui_0953 at 978.836 kb on - strand at 978.963 kb on + strand, within Dsui_0953 at 978.971 kb on - strand, within Dsui_0953 at 979.038 kb on - strand at 979.213 kb on + strand, within Dsui_0953 at 979.379 kb on - strand, within Dsui_0953 at 979.511 kb on + strand at 979.526 kb on + strand at 979.587 kb on - strand at 979.636 kb on + strand, within Dsui_0954 at 979.644 kb on - strand, within Dsui_0954 at 979.668 kb on - strand at 979.837 kb on + strand at 979.846 kb on + strand, within Dsui_0954 at 979.956 kb on + strand at 980.077 kb on - strand, within Dsui_0954 at 980.163 kb on + strand, within Dsui_0954 at 980.242 kb on - strand, within Dsui_0954
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM remove 977,590 + Dsui_0951 0.85 +0.3 977,590 + Dsui_0951 0.85 +0.4 977,598 - Dsui_0951 0.86 -0.2 977,632 - Dsui_0951 0.89 +0.1 977,666 + -0.3 977,666 + +0.6 977,672 + +0.7 977,676 + +0.1 977,684 - +0.8 977,695 + -0.1 977,752 + +0.7 977,850 - +0.7 977,865 - +0.8 977,889 - +0.7 977,942 - Dsui_0952 0.13 +0.2 977,962 + Dsui_0952 0.17 -0.6 978,105 + Dsui_0952 0.39 -0.1 978,143 + -0.3 978,143 + Dsui_0952 0.46 +0.1 978,151 - Dsui_0952 0.47 +0.5 978,156 - Dsui_0952 0.48 +0.1 978,165 + Dsui_0952 0.49 +0.3 978,172 - Dsui_0952 0.50 +0.7 978,316 + +0.1 978,316 + +0.1 978,316 + Dsui_0952 0.73 -0.2 978,349 - Dsui_0952 0.79 +0.6 978,419 + Dsui_0952 0.90 -1.4 978,419 + +0.7 978,427 - +0.2 978,463 - +0.4 978,499 - -1.5 978,728 - Dsui_0953 0.16 -0.1 978,754 - Dsui_0953 0.19 -0.9 978,831 + Dsui_0953 0.27 -1.5 978,836 - +0.4 978,963 + Dsui_0953 0.42 -1.3 978,971 - Dsui_0953 0.43 -3.0 979,038 - +0.7 979,213 + Dsui_0953 0.69 -0.5 979,379 - Dsui_0953 0.87 +0.1 979,511 + -0.8 979,526 + +1.0 979,587 - -0.2 979,636 + Dsui_0954 0.14 -0.2 979,644 - Dsui_0954 0.15 -0.3 979,668 - -0.5 979,837 + +0.9 979,846 + Dsui_0954 0.39 +0.1 979,956 + +1.1 980,077 - Dsui_0954 0.66 -0.1 980,163 + Dsui_0954 0.76 +0.2 980,242 - Dsui_0954 0.85 -0.4
Or see this region's nucleotide sequence