Experiment: rich media with hydrogen peroxide 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0945 and Dsui_0946 are separated by 10 nucleotides Dsui_0946 and Dsui_0947 are separated by 5 nucleotides Dsui_0947 and Dsui_0948 are separated by 5 nucleotides Dsui_0948 and Dsui_0949 are separated by 40 nucleotides Dsui_0949 and Dsui_0950 overlap by 4 nucleotides
Dsui_0945: Dsui_0945 - Iron-sulfur cluster assembly accessory protein, at 973,640 to 974,056
_0945
Dsui_0946: Dsui_0946 - putative nitrogen fixation protein FixT, at 974,067 to 974,561
_0946
Dsui_0947: Dsui_0947 - hypothetical protein, at 974,567 to 975,425
_0947
Dsui_0948: Dsui_0948 - hypothetical protein, at 975,431 to 975,850
_0948
Dsui_0949: Dsui_0949 - hypothetical protein, at 975,891 to 976,106
_0949
Dsui_0950: Dsui_0950 - acyl dehydratase, at 976,103 to 976,603
_0950
Position (kb) 974
975
976 Strain fitness (log2 ratio) -2
-1
0
1 at 973.580 kb on - strand at 973.588 kb on + strand at 973.588 kb on + strand at 973.596 kb on + strand at 973.816 kb on + strand, within Dsui_0945 at 973.864 kb on + strand, within Dsui_0945 at 973.907 kb on - strand, within Dsui_0945 at 974.081 kb on - strand at 974.207 kb on - strand, within Dsui_0946 at 974.265 kb on + strand, within Dsui_0946 at 974.340 kb on - strand, within Dsui_0946 at 974.340 kb on - strand at 974.523 kb on - strand at 974.647 kb on + strand at 974.694 kb on - strand, within Dsui_0947 at 974.771 kb on + strand, within Dsui_0947 at 974.877 kb on + strand, within Dsui_0947 at 974.959 kb on + strand, within Dsui_0947 at 975.083 kb on - strand, within Dsui_0947 at 975.355 kb on - strand at 975.410 kb on - strand at 975.468 kb on + strand at 975.543 kb on + strand at 975.590 kb on + strand, within Dsui_0948 at 975.599 kb on - strand at 975.918 kb on - strand, within Dsui_0949 at 976.147 kb on + strand at 976.398 kb on + strand, within Dsui_0950
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM remove 973,580 - +0.9 973,588 + +0.9 973,588 + -2.0 973,596 + +0.5 973,816 + Dsui_0945 0.42 +0.3 973,864 + Dsui_0945 0.54 -0.0 973,907 - Dsui_0945 0.64 +0.5 974,081 - -0.4 974,207 - Dsui_0946 0.28 +1.2 974,265 + Dsui_0946 0.40 -0.4 974,340 - Dsui_0946 0.55 +0.7 974,340 - -0.3 974,523 - -0.4 974,647 + +0.5 974,694 - Dsui_0947 0.15 +0.5 974,771 + Dsui_0947 0.24 -0.1 974,877 + Dsui_0947 0.36 -0.6 974,959 + Dsui_0947 0.46 +1.3 975,083 - Dsui_0947 0.60 +1.2 975,355 - +0.4 975,410 - -0.2 975,468 + -0.3 975,543 + +0.3 975,590 + Dsui_0948 0.38 +0.2 975,599 - +1.1 975,918 - Dsui_0949 0.12 -0.7 976,147 + -0.9 976,398 + Dsui_0950 0.59 +0.0
Or see this region's nucleotide sequence